| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,673,751 – 9,673,848 |
| Length | 97 |
| Max. P | 0.934608 |
| Location | 9,673,751 – 9,673,848 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 76.67 |
| Shannon entropy | 0.43220 |
| G+C content | 0.45393 |
| Mean single sequence MFE | -24.64 |
| Consensus MFE | -14.49 |
| Energy contribution | -15.93 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9673751 97 - 23011544 ACCGCAUUUUAUGAGCCGCAACAUGGCGUUCGCUGUGAGCGCUCCAGCAGAGCUAGCAAAAAAAAAAAAAAUCAUAAGCUCAGCCAUAAAAUCGAAC ..((.((((((((.((.((.....(((((((.....)))))))...)).(((((......................))))).))))))))))))... ( -25.35, z-score = -2.13, R) >droAna3.scaffold_12943 1104212 88 - 5039921 CCCGAAUUUUAUGGACCACAUUAUGGCGUAUGCGUAAUGUGCACAAAGAGAA---------AACAGGAAAAUUAUAAGCUCGGCCAUAAAAUGGAAC .((..(((((((((.((((((((((.......)))))))).......(((..---------.................))))))))))))))))... ( -20.21, z-score = -1.99, R) >droEre2.scaffold_4929 10286785 75 - 26641161 ACCGCAUUUUAUGGGCCGCAACAUGGCGUUUGCUAAGUGCGCUCCAGCAGAGCU----------------------GGCUCAGCCAUAAAAUCGAAC ..((.(((((((((((((((...((((....))))..)))((((.....)))).----------------------)))....)))))))))))... ( -25.90, z-score = -1.61, R) >droYak2.chr2L 12359521 87 - 22324452 ACCACAUUUUAUGGGCCGCCACAUGGCGUUUGAUAAGUGCGC-CCAGCAGUGCUAGC---------GAAAAUUAUAAGCUCAUCCAUAAAAUCGAAC .....((((((((((..(((....)))(((((.(((...(((-..(((...))).))---------)....))))))))...))))))))))..... ( -21.80, z-score = -1.19, R) >droSec1.super_3 5120190 96 - 7220098 AUCGCAUUUUAUGGACCGCAACAUGGCGUUCGCUGAGUGCGCUCCAGCAGAGCUAGC-AAAAAAAAAAAAAUUAUAAGCUCAGCCAUAAAAUCGAAC .(((.((((((((((.(((......))).))(((((((((((((.....))))..))-...................)))))))))))))))))).. ( -27.60, z-score = -2.87, R) >droSim1.chr2L 9451502 93 - 22036055 ACCGCAUUUUAUGGGCCGCAACAUGGCGUUCGCUGAGUGCGCUCCAGCAGAGCUAGC----AAAAAAAAAAUUAUAAGCUCAGCCAUAAAAUCGAAC ..((.(((((((((((((.....))))....((((((....)).)))).(((((...----...............)))))..)))))))))))... ( -26.97, z-score = -1.91, R) >consensus ACCGCAUUUUAUGGGCCGCAACAUGGCGUUCGCUGAGUGCGCUCCAGCAGAGCUAGC____AAAAAAAAAAUUAUAAGCUCAGCCAUAAAAUCGAAC ..((.(((((((((..((((...((((....))))..))))........(((((......................)))))..)))))))))))... (-14.49 = -15.93 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:44 2011