| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,665,526 – 1,665,622 |
| Length | 96 |
| Max. P | 0.936945 |
| Location | 1,665,526 – 1,665,622 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 96.53 |
| Shannon entropy | 0.04783 |
| G+C content | 0.59722 |
| Mean single sequence MFE | -23.83 |
| Consensus MFE | -22.15 |
| Energy contribution | -22.60 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.936945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1665526 96 - 22422827 CCCCGAUCCGCCACCCCAUCCCACCAUCCGCUACUCCAUCCGUCGUAUUUUUAUAUGAAAAGCCAAGCGCCAAGCGCUCCUCCGCAGGUGGAUAGC .....(((((((..............................((((((....))))))...((..(((((...))))).....)).)))))))... ( -21.70, z-score = -2.33, R) >droSim1.chrX 1174598 96 - 17042790 CCCCGCUCCGCCACCCCAUCCCGUCAUCCGCUACUCCAUCCGUCGUAUUUUUAUAUGAAAAGCCAAGCGCCAAGCGCUCCUCCGCAGGUGGAUGGC ......................((((((((((..........((((((....))))))...((..(((((...))))).....)).)))))))))) ( -24.90, z-score = -2.03, R) >droSec1.super_10 1459953 96 - 3036183 CCCCGCUCCGCCACCCCUUCCCGUCAUCCGCUACUCCAUCCGUCGUAUUUUUAUAUGAAAAGCCAAGCGCCAAGCGCUCCUCCGCAGGUGGAUGGC ......................((((((((((..........((((((....))))))...((..(((((...))))).....)).)))))))))) ( -24.90, z-score = -2.00, R) >consensus CCCCGCUCCGCCACCCCAUCCCGUCAUCCGCUACUCCAUCCGUCGUAUUUUUAUAUGAAAAGCCAAGCGCCAAGCGCUCCUCCGCAGGUGGAUGGC ......................((((((((((..........((((((....))))))...((..(((((...))))).....)).)))))))))) (-22.15 = -22.60 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:17 2011