| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,649,554 – 1,649,620 |
| Length | 66 |
| Max. P | 0.767961 |
| Location | 1,649,554 – 1,649,620 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 74.61 |
| Shannon entropy | 0.39821 |
| G+C content | 0.47519 |
| Mean single sequence MFE | -13.43 |
| Consensus MFE | -9.95 |
| Energy contribution | -10.07 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1649554 66 + 22422827 CUACUCCCAUUCCAGUCGGCAGAAGGCACAUAUGUAUGUAUAUACAUACGUAUUCAGCCACGUUGC ..................((((..(((..((((((((((....))))))))))...)))...)))) ( -16.90, z-score = -2.28, R) >droEre2.scaffold_4644 1626671 54 + 2521924 CGAAACCCACUGCGCCCGGCAGAAGGCACAUGCAUAU------------GUAUUCAGAUACGCUGC .....((..((((.....))))..)).....(((..(------------((((....))))).))) ( -8.90, z-score = 1.16, R) >droSec1.super_10 1444482 60 + 3036183 --AAACCCAUUCCAGCUGGCAGAAGGCACAUAUGUAU----AUACGUACAUAUUCAGCCACGUUGC --..........((((((((.((......((((((((----....)))))))))).)))).)))). ( -14.10, z-score = -1.79, R) >droSim1.chrX 1158639 59 + 17042790 ---AACCCAUUCCAGCUGGCAGAAGGCACAUAUGUAU----AUACAUACAUAUUCAGCCACGUUGC ---.........((((((((.((......((((((((----....)))))))))).)))).)))). ( -13.80, z-score = -2.01, R) >consensus __AAACCCAUUCCAGCCGGCAGAAGGCACAUAUGUAU____AUACAUACAUAUUCAGCCACGUUGC ..................((((..(((..((((((((........))))))))...)))...)))) ( -9.95 = -10.07 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:14 2011