| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,669,393 – 9,669,475 |
| Length | 82 |
| Max. P | 0.996646 |
| Location | 9,669,393 – 9,669,475 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 86.51 |
| Shannon entropy | 0.24955 |
| G+C content | 0.44600 |
| Mean single sequence MFE | -29.97 |
| Consensus MFE | -23.00 |
| Energy contribution | -22.92 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.16 |
| Mean z-score | -3.34 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.96 |
| SVM RNA-class probability | 0.996646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9669393 82 + 23011544 CGGCAUGGCUACGUGUAGAUACAAAUGUAUCUAUCAGCCAUGCAGCUGUAUUUGUGUCUUUGCGAAUGUCUAGCUGCCUUUU ..((((((((....((((((((....)))))))).))))))))((((((((((((......)))))))..)))))....... ( -31.30, z-score = -4.00, R) >droSim1.chr2L 9443500 78 + 22036055 UGGCAUGGCUACGUGUAGAUACAAAUGUAUCUAC--ACCAUGCAGCUGUAUUUGUGUCUUUGCGAAUGUCUAGCUGUCUU-- ..((((((.....(((((((((....))))))))--)))))))((((((((((((......)))))))..))))).....-- ( -28.90, z-score = -3.67, R) >droSec1.super_3 5115944 78 + 7220098 UGGCAUGGCUACGUGUAGAUACAAAUGUAUCUAC--ACCAUGCAGCUGUAUUUGUGUCUUUGCGAAUGUCUAGCUGUCUU-- ..((((((.....(((((((((....))))))))--)))))))((((((((((((......)))))))..))))).....-- ( -28.90, z-score = -3.67, R) >droYak2.chr2L 12355153 80 + 22324452 UGGCAUGGCUACGUGUAGAUACAAAUGUAUCUAC--ACCAGGCAGCUGUAGUUGUGUCUUUGCGAAUGUCUAGCUGCCGCUU .(((........((((((((((....))))))))--))..((((((((...((((......)))).....))))))))))). ( -33.10, z-score = -3.51, R) >droEre2.scaffold_4929 10282381 80 + 26641161 UGGCAUGGCUACGUGUAGAUACAAAUGUAUCUAC--ACCAGGCAGCUGUAUUUGUGUCUUUGCGAGUGUCUAGCUGUCGCUU .(((........((((((((((....))))))))--))..(((((((((((((((......)))))))..))))))))))). ( -33.20, z-score = -3.78, R) >droAna3.scaffold_12943 1099377 75 + 5039921 CGACAUGCUCGCGUGUAGAUACAAAUGUAUCUAU-------GCAGCUGUACUUGUAUCUUAGCUAGUGUCUAGCUGGCGCUU ..........((((((((((((....))))))))-------.((((((((((.((......)).))))..)))))))))).. ( -24.40, z-score = -1.42, R) >consensus UGGCAUGGCUACGUGUAGAUACAAAUGUAUCUAC__ACCAUGCAGCUGUAUUUGUGUCUUUGCGAAUGUCUAGCUGUCGCUU ..(((((....)))))((((((....)))))).........((((((((((((((......)))))))..)))))))..... (-23.00 = -22.92 + -0.08)
| Location | 9,669,393 – 9,669,475 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 86.51 |
| Shannon entropy | 0.24955 |
| G+C content | 0.44600 |
| Mean single sequence MFE | -22.86 |
| Consensus MFE | -13.64 |
| Energy contribution | -14.39 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.840418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9669393 82 - 23011544 AAAAGGCAGCUAGACAUUCGCAAAGACACAAAUACAGCUGCAUGGCUGAUAGAUACAUUUGUAUCUACACGUAGCCAUGCCG .....((((((......((.....)).........))))))(((((((.(((((((....)))))))....))))))).... ( -24.46, z-score = -3.23, R) >droSim1.chr2L 9443500 78 - 22036055 --AAGACAGCUAGACAUUCGCAAAGACACAAAUACAGCUGCAUGGU--GUAGAUACAUUUGUAUCUACACGUAGCCAUGCCA --.....((((......((.....)).........))))(((((((--((((((((....)))))))).....))))))).. ( -20.86, z-score = -2.39, R) >droSec1.super_3 5115944 78 - 7220098 --AAGACAGCUAGACAUUCGCAAAGACACAAAUACAGCUGCAUGGU--GUAGAUACAUUUGUAUCUACACGUAGCCAUGCCA --.....((((......((.....)).........))))(((((((--((((((((....)))))))).....))))))).. ( -20.86, z-score = -2.39, R) >droYak2.chr2L 12355153 80 - 22324452 AAGCGGCAGCUAGACAUUCGCAAAGACACAACUACAGCUGCCUGGU--GUAGAUACAUUUGUAUCUACACGUAGCCAUGCCA ..(((((((((((....((.....)).....))..)))))))..((--((((((((....))))))))))...))....... ( -28.10, z-score = -3.44, R) >droEre2.scaffold_4929 10282381 80 - 26641161 AAGCGACAGCUAGACACUCGCAAAGACACAAAUACAGCUGCCUGGU--GUAGAUACAUUUGUAUCUACACGUAGCCAUGCCA ..((((...........))))...............(((((...((--((((((((....)))))))))))))))....... ( -23.60, z-score = -2.56, R) >droAna3.scaffold_12943 1099377 75 - 5039921 AAGCGCCAGCUAGACACUAGCUAAGAUACAAGUACAGCUGC-------AUAGAUACAUUUGUAUCUACACGCGAGCAUGUCG .......((((((...)))))).........(.((((((((-------.(((((((....)))))))...)).))).)))). ( -19.30, z-score = -1.27, R) >consensus AAAAGACAGCUAGACAUUCGCAAAGACACAAAUACAGCUGCAUGGU__GUAGAUACAUUUGUAUCUACACGUAGCCAUGCCA .......((((........................))))((.((((..((((((((....)))))))).....)))).)).. (-13.64 = -14.39 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:43 2011