| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,642,605 – 1,642,721 |
| Length | 116 |
| Max. P | 0.505590 |
| Location | 1,642,605 – 1,642,721 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 122 |
| Reading direction | reverse |
| Mean pairwise identity | 90.13 |
| Shannon entropy | 0.16532 |
| G+C content | 0.61069 |
| Mean single sequence MFE | -42.04 |
| Consensus MFE | -36.56 |
| Energy contribution | -36.72 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1642605 116 - 22422827 ------UACGAAUCCCGACUAGGACUGAGGGAUGGUCGAUGGGUGACGGGUGACGGGUCACGGCGGAGCACAGCCACCUGGCGGGCCUGUCAGCGAGGGCUGAUAGCUGAUAGUUGAUAGCC ------..((.((((((((((...(....)..))))))..))))..))(.(((((((((.((.(((.(........)))).))))))))))).)...(((((.((((.....)))).))))) ( -42.30, z-score = -0.45, R) >droEre2.scaffold_4644 1620153 115 - 2521924 UACGGAUACGAGUACCGACUAGGACUGAGGGAUGG-------GCGACGGGUGACGGGUCACGGCGGAACACAGCCACCUGGAGGGGCUGUCAGCGAGGGCUGAUAGCUGAUAGUUGAUAGCC ..((....)).....((((((...((..(((....-------.......((((....))))(((........))).)))..)).((((((((((....))))))))))..))))))...... ( -37.90, z-score = -0.98, R) >droYak2.chrX 1485589 115 - 21770863 UACGAAUACGAAUCCCGACUAGGAGUGAGGAAUGG-------GCGACGGGUGACGGGUCACGGCGGAACACAGCCACCUGGUGGGGCUGUCAGCGAGGGCUGAUAGCUGAUAGUUGAUAGCC .............(((.((((((.((((......(-------....).(....)...))))(((........))).)))))))))(((((((((...(((.....)))....))))))))). ( -40.90, z-score = -1.63, R) >droSec1.super_10 1437606 116 - 3036183 ------UACGAAUCCCGACUAGGACUGAGGGAUGGUCGAUGGGCGACGGGUGACGGGUCACGGCGGAACACAGCCACCUGGCGGGGCUGUCAGCGAGGGCUGAUAGCUGAUAGUUGAUAGUC ------..(((..((((.(((((...........((((.....))))..((((....))))(((........))).)))))))))(((((((((....)))))))))......)))...... ( -44.40, z-score = -1.69, R) >droSim1.chrX 1151770 116 - 17042790 ------UACGAAUCCCGACUAGGACUGAGGGAUGGUCGAUGGGCGACGGGUGACGGGUCACGGCGGAACACAGCCACCUGGCGGGGCUGUCAGCGAGGGCUGAUAGCUGAUAGUUGAUAGCC ------.......((((.(((((...........((((.....))))..((((....))))(((........))).)))))))))(((((((((...(((.....)))....))))))))). ( -44.70, z-score = -1.65, R) >consensus ______UACGAAUCCCGACUAGGACUGAGGGAUGGUCGAUGGGCGACGGGUGACGGGUCACGGCGGAACACAGCCACCUGGCGGGGCUGUCAGCGAGGGCUGAUAGCUGAUAGUUGAUAGCC ..............(((.(((((..........................((((....))))(((........))).))))))))((((((((((...(((.....)))....)))))))))) (-36.56 = -36.72 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:13 2011