| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,631,029 – 1,631,110 |
| Length | 81 |
| Max. P | 0.846526 |
| Location | 1,631,029 – 1,631,110 |
|---|---|
| Length | 81 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 58.61 |
| Shannon entropy | 0.54262 |
| G+C content | 0.38908 |
| Mean single sequence MFE | -22.23 |
| Consensus MFE | -7.71 |
| Energy contribution | -5.83 |
| Covariance contribution | -1.88 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.846526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1631029 81 - 22422827 --------------AUACGCACACGUUCAUGUUGAGUU-AUUAAUAUGCUGACUGGAACAUAGGACGGUAUACCGUAUACCGUAUAUGAUAUACCA --------------..........(((((((((.((((-(.........))))).).)))).))))((((((.((((((...)))))).)))))). ( -19.50, z-score = -0.93, R) >droSim1.chrX_random 1077677 81 - 5698898 --------------AUACGCACACGUUCAUGUUGAGUU-AUUCAUAUGCUGACUGGAACAUAGGACGGUAUACCGUAUACCGUAUAUGAUAUACCA --------------..........(((((((((.((((-(.........))))).).)))).))))((((((.((((((...)))))).)))))). ( -19.50, z-score = -0.72, R) >droPer1.super_233 20514 95 - 33581 ACACAAAAUCAAGUGAAUCUACAUCAACAGAUUCAUUUGAUUUGUUCACUGACCCAUAC-CAGGUCGGCGGAAAGCAGCUCAUACAGAACAUAUAA .....(((((((((((((((........)))))))))))))))((((...((((.....-..))))(((........)))......))))...... ( -27.70, z-score = -5.11, R) >consensus ______________AUACGCACACGUUCAUGUUGAGUU_AUUAAUAUGCUGACUGGAACAUAGGACGGUAUACCGUAUACCGUAUAUGAUAUACCA ..............(((((...(((....)))............(((((((.((........)).)))))))........)))))........... ( -7.71 = -5.83 + -1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:08 2011