| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,621,372 – 1,621,475 |
| Length | 103 |
| Max. P | 0.686755 |
| Location | 1,621,372 – 1,621,475 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.22 |
| Shannon entropy | 0.33042 |
| G+C content | 0.58203 |
| Mean single sequence MFE | -29.41 |
| Consensus MFE | -14.29 |
| Energy contribution | -14.40 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.686755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1621372 103 - 22422827 AGCAACUCCUCCUUCCACC-----UCACUGGCCAUAGAUAUUAUGGCCACAAACCAAUAG-CUCCAGCUCCAGCACCAGCAC----CAGCA-------CCACCUCCCCUUUUGCUGGCUG .((................-----....(((((((((...))))))))).........((-(....)))...))..((((..----(((((-------.............))))))))) ( -23.32, z-score = -2.34, R) >droSec1.super_10 1425889 97 - 3036183 AGCCACUCCCCCUUCCACC-----UCACUGGCCAUAGAUAUUAUGGCCACAAACCAACAG-CUCCAGCUCC------AGCAC----CAGCA-------CCACCUCCCCUUUUGCUGGCUG ...................-----....(((((((((...)))))))))........(((-(....((...------.))..----(((((-------.............))))))))) ( -21.92, z-score = -2.54, R) >droYak2.chrX 1472368 117 - 21770863 AGCCACUCCCCAUGCCACCCCCAUUCACUUGCCAUAGA---UAUGGCCACAAACCGCCAGUCGCCAGCCGACGGAACAGAAUGGAGCAGGAGGAGGGGCCACCUCCCCUUUUGCUGGCUG ((((................((((((....(((((...---.))))).........((.((((.....))))))....))))))(((((((((.((((....))))))))))))))))). ( -43.00, z-score = -2.20, R) >consensus AGCCACUCCCCCUUCCACC_____UCACUGGCCAUAGAUAUUAUGGCCACAAACCAACAG_CUCCAGCUCC_G_A_CAGCAC____CAGCA_______CCACCUCCCCUUUUGCUGGCUG ............................((((((((.....))))))))........(((...(((((............................................)))))))) (-14.29 = -14.40 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:05 2011