| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,614,399 – 1,614,488 |
| Length | 89 |
| Max. P | 0.613407 |
| Location | 1,614,399 – 1,614,488 |
|---|---|
| Length | 89 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.67 |
| Shannon entropy | 0.45456 |
| G+C content | 0.44453 |
| Mean single sequence MFE | -24.71 |
| Consensus MFE | -14.40 |
| Energy contribution | -15.19 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1614399 89 + 22422827 -------UCGCAGUCUGGAUGAUUCGCCUUUCA----UCUGCGUUUGUUUGCAGCCAGACAAUUGAAGUGCAAUUUGCACAUUUGGCUCUUGACGCCAAU----- -------.....((((((((((........)))----)(((((......))))))))))).......((((.....))))..(((((.......))))).----- ( -28.30, z-score = -1.89, R) >droEre2.scaffold_4644 1602379 89 + 2521924 -------UCGCAGACAGGAUGAUUCGCCUUUCA----UCUGCGUUUGUUUGCAGCCAGACAAUUGAAGUGCAAUUUGCACAUUUGGCUCUUGACGCCAAU----- -------..(((((((((((((........)))----))).....)))))))((((((((....)..((((.....)))).)))))))............----- ( -26.30, z-score = -1.35, R) >droYak2.chrX 1466999 89 + 21770863 -------UCGCAGUCCGGAUGAUUCGCCUUUCA----UCUGCGUUUGUUUGCAGCCAGACAAUUGAAGUGCAAUUUGCACAUUUGGCUCUUGACGCCAAU----- -------........(((((((........)))----))))((.(((((((....))))))).))..((((.....))))..(((((.......))))).----- ( -24.30, z-score = -0.66, R) >droSec1.super_10 1418759 89 + 3036183 -------UCGCAGUCUGGAUGAUUCGCCUUUCA----UCUGCGUUUGUUUGCAGCCAGACAAUUGAAGUGCAAUUUGCACAUUUGGCUCUUGACGCCAAU----- -------.....((((((((((........)))----)(((((......))))))))))).......((((.....))))..(((((.......))))).----- ( -28.30, z-score = -1.89, R) >droSim1.chrX 1145430 89 + 17042790 -------UCGCAGUCUGGAUGAUUCGCCUUUCA----UCUGCGUUUGUUUGCAGCCAGACAAUUGAAGUGCAAUUUGCACAUUUGGCUCUUGACGCCAAU----- -------.....((((((((((........)))----)(((((......))))))))))).......((((.....))))..(((((.......))))).----- ( -28.30, z-score = -1.89, R) >dp4.chrXL_group1a 4792033 105 - 9151740 UUGCCUAUCCCUAUUCAUUCGUUAUUCAUUAUUCGUUUAUUCGUUUGUUUGCAAGCAGACAAUUGAAGUGCAAUUUGCACAUUUCACAGCUGCCGUCCUGUCGAU .......................................((((.(((((((....))))))).))))((((.....))))...((((((........)))).)). ( -17.90, z-score = -0.63, R) >droGri2.scaffold_14853 720133 91 + 10151454 -------UCGCAACUUGCAGUCUUCUCUUUGCAGUCUUUUUUGUUUGCUUGUCGCUCAACAAUUGAAGUGUAAUUUGUAAGUUU--CUGUGGGCUUCGAC----- -------(((...((..(((.((((...(((((..((((.(((((.((.....))..)))))..)))))))))...).)))...--)))..))...))).----- ( -19.60, z-score = -0.71, R) >consensus _______UCGCAGUCUGGAUGAUUCGCCUUUCA____UCUGCGUUUGUUUGCAGCCAGACAAUUGAAGUGCAAUUUGCACAUUUGGCUCUUGACGCCAAU_____ ........(((((......(((........))).....))))).(((((((....))))))).....((((.....))))..(((((.......)))))...... (-14.40 = -15.19 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:04 2011