| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,662,729 – 9,662,792 |
| Length | 63 |
| Max. P | 0.993361 |
| Location | 9,662,729 – 9,662,792 |
|---|---|
| Length | 63 |
| Sequences | 8 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 80.99 |
| Shannon entropy | 0.40506 |
| G+C content | 0.50926 |
| Mean single sequence MFE | -19.11 |
| Consensus MFE | -14.20 |
| Energy contribution | -14.89 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.61 |
| SVM RNA-class probability | 0.993361 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9662729 63 + 23011544 GCGGUACCAACUAUCAGUGGUGAGUGAAAAUCGCUGAUGCGUGGCGCGGAAAAUGGAAGGAGC .(.(..(((..((((((((((........))))))))))..)))..).).............. ( -19.10, z-score = -2.07, R) >droSim1.chr2L 9436470 63 + 22036055 GCGGUGCCAACUAUCAGUGGUGAGUGAAAAUCGCUGAUGCGUGGCGCGGAAAAUGGAAGGAGA .(.((((((..((((((((((........))))))))))..)))))).).............. ( -24.50, z-score = -4.04, R) >droSec1.super_3 5109152 63 + 7220098 GCGGUGCCAACUAUCAGUGGUGAGUGAAAAUCGCUGAUGCGUGGCGCGGAAAAUGGAUGGAGA .(.((((((..((((((((((........))))))))))..)))))).).............. ( -24.50, z-score = -3.86, R) >droYak2.chr2L 12348250 63 + 22324452 GCGGUGCCAACUAUCAGUGGUGAGUGAAAAUCGCUGAUGCGUGGCGCGGAAAAUGGCAGGAGA .(.((((((..((((((((((........))))))))))..)))))).).............. ( -24.50, z-score = -3.18, R) >droEre2.scaffold_4929 10269853 63 + 26641161 GCGGUGCCAACUAUCAGUGGUGAGUGAAAAUCGCUGAUGCGUGGCGCGGAAAAUGGAUGGGGA .(.((((((..((((((((((........))))))))))..)))))).).............. ( -24.50, z-score = -3.77, R) >droAna3.scaffold_12943 1092884 61 + 5039921 GCGGUGCCAACUAUCAGUGUUGAGUGAAAAUCGCUGAUGCGUGUU--GGAGGAUAGAGGGAGA ......(((((((((((((............))))))))...)))--)).............. ( -13.50, z-score = -0.27, R) >droVir3.scaffold_12723 4172862 52 + 5802038 GCCGUUUCAACUAUCAGCGUUGAGUGAAAAUCGCUGAUGCAAAGCGCAAAAA----------- ((.((((....((((((((............))))))))..)))))).....----------- ( -12.60, z-score = -1.01, R) >droMoj3.scaffold_6500 17835298 61 - 32352404 GCCGUUUCAACUAUCAGCCCUGAGUAAAAAUCGCUGAUGCAAAGAGCAGAAUAUGAAAAAA-- ....(((((...((((((...((.......))))))))((.....))......)))))...-- ( -9.70, z-score = -1.03, R) >consensus GCGGUGCCAACUAUCAGUGGUGAGUGAAAAUCGCUGAUGCGUGGCGCGGAAAAUGGAAGGAGA ...((((((..((((((((.(........).))))))))..))))))................ (-14.20 = -14.89 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:42 2011