| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,605,968 – 1,606,025 |
| Length | 57 |
| Max. P | 0.596621 |
| Location | 1,605,968 – 1,606,025 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 96.49 |
| Shannon entropy | 0.06333 |
| G+C content | 0.58947 |
| Mean single sequence MFE | -18.76 |
| Consensus MFE | -16.76 |
| Energy contribution | -17.20 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1605968 57 - 22422827 UGGCGACAAUUACCCCGGACUAACCCGGACUUGCAAUGGCUGUCGGCCGUUGACAGG ((....))......((((......)))).(((((((((((.....))))))).)))) ( -20.80, z-score = -2.15, R) >droEre2.scaffold_4644 1593961 57 - 2521924 UGGCGACAAUUACCCCGGACUAACCAGGACUUGCAAUGUCUGUCGGCCGUUGACAGG .((((((.........((.....)).((((.......))))))).)))......... ( -12.80, z-score = 0.45, R) >droYak2.chrX 1458622 57 - 21770863 UGGCGACAAUUACCCCGGACUAACCCGGACUGGCAAUGGCUGACGGCUGUUGACAGG ((....))......((((......)))).(((.(((((((.....))))))).))). ( -18.60, z-score = -1.92, R) >droSec1.super_10 1410531 57 - 3036183 UGGCGACAAUUACCCCGGACUAACCCGGACUUGCAAUGGCUGUCGGCCGUUGACAGG ((....))......((((......)))).(((((((((((.....))))))).)))) ( -20.80, z-score = -2.15, R) >droSim1.chrX 1137235 57 - 17042790 UGGCGACAAUUACCCCGGACUAACCCGGACUUGCAAUGGCUGUCGGCCGUUGACAGG ((....))......((((......)))).(((((((((((.....))))))).)))) ( -20.80, z-score = -2.15, R) >consensus UGGCGACAAUUACCCCGGACUAACCCGGACUUGCAAUGGCUGUCGGCCGUUGACAGG ((....))......((((......)))).(((((((((((.....))))))).)))) (-16.76 = -17.20 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:01 2011