| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,605,277 – 1,605,340 |
| Length | 63 |
| Max. P | 0.938085 |
| Location | 1,605,277 – 1,605,340 |
|---|---|
| Length | 63 |
| Sequences | 4 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 84.08 |
| Shannon entropy | 0.26564 |
| G+C content | 0.67736 |
| Mean single sequence MFE | -22.35 |
| Consensus MFE | -14.15 |
| Energy contribution | -15.08 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.938085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1605277 63 - 22422827 CUCCCAGCUGCCUUCCCCCGACCAUCACCACCCAACCGGGCUCCUGGGGAACUUGUGCAGCUG ....((((((((((((((.(.....)....(((....))).....))))))...).))))))) ( -22.60, z-score = -2.59, R) >droYak2.chrX 1457903 54 - 21770863 -------CUCCCUGCUCCC--CGACCACCACCCACCUGGACUCCUGGGGAACUUGUGCAGCUG -------....((((((((--((....(((......))).....))))))......))))... ( -13.70, z-score = -0.88, R) >droSec1.super_10 1409863 62 - 3036183 -CUCCGGCUGCCUUCCCCCGCCCAUCACCACCCACCUGGGCUCCUGGGGAACUUGUGCAGCUG -...((((((((((((((.(((((............)))))....))))))...).))))))) ( -26.20, z-score = -3.29, R) >droSim1.chrX 1136547 63 - 17042790 CUCCCAGCUGCCUUCCCCCGCCCAUCACCACCCACCUGGGCUCCUGGGGAACUUGUGCAGCUG ....((((((((((((((.(((((............)))))....))))))...).))))))) ( -26.90, z-score = -3.88, R) >consensus _UCCCAGCUGCCUUCCCCCGCCCAUCACCACCCACCUGGGCUCCUGGGGAACUUGUGCAGCUG ....((((((((((((((.........((........))......))))))...).))))))) (-14.15 = -15.08 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:00 2011