| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,596,888 – 1,596,946 |
| Length | 58 |
| Max. P | 0.838769 |
| Location | 1,596,888 – 1,596,946 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.39655 |
| Mean single sequence MFE | -11.20 |
| Consensus MFE | -11.20 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.838769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1596888 58 + 22422827 CUGCCACGCAGACAAAAACAUCCAAUUUGCUUGUUAAUUGAAAACAAUUAAGCUGGCC ..((((.((((.((((.........))))))..(((((((....))))))))))))). ( -11.20, z-score = -1.36, R) >droEre2.scaffold_4644 1583936 58 + 2521924 CUGCCACGCAGACAAAAACAUCCAAUUUGCUUGUUAAUUGAAAACAAUUAAGCUGGCC ..((((.((((.((((.........))))))..(((((((....))))))))))))). ( -11.20, z-score = -1.36, R) >droYak2.chrX 1450357 58 + 21770863 CUGCCACGCAGACAAAAACAUCCAAUUUGCUUGUUAAUUGAAAACAAUUAAGCUGGCC ..((((.((((.((((.........))))))..(((((((....))))))))))))). ( -11.20, z-score = -1.36, R) >droSec1.super_10 1402253 58 + 3036183 CUGCCACGCAGACAAAAACAUCCAAUUUGCUUGUUAAUUGAAAACAAUUAAGCUGGCC ..((((.((((.((((.........))))))..(((((((....))))))))))))). ( -11.20, z-score = -1.36, R) >droSim1.chrX_random 1060968 58 + 5698898 CUGCCACGCAGACAAAAACAUCCAAUUUGCUUGUUAAUUGAAAACAAUUAAGCUGGCC ..((((.((((.((((.........))))))..(((((((....))))))))))))). ( -11.20, z-score = -1.36, R) >consensus CUGCCACGCAGACAAAAACAUCCAAUUUGCUUGUUAAUUGAAAACAAUUAAGCUGGCC ..((((.((((.((((.........))))))..(((((((....))))))))))))). (-11.20 = -11.20 + 0.00)
| Location | 1,596,888 – 1,596,946 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.39655 |
| Mean single sequence MFE | -13.60 |
| Consensus MFE | -13.60 |
| Energy contribution | -13.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.90 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1596888 58 - 22422827 GGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAG .(((((((((((((....)))))))..........((((......)))))).)))).. ( -13.60, z-score = -0.90, R) >droEre2.scaffold_4644 1583936 58 - 2521924 GGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAG .(((((((((((((....)))))))..........((((......)))))).)))).. ( -13.60, z-score = -0.90, R) >droYak2.chrX 1450357 58 - 21770863 GGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAG .(((((((((((((....)))))))..........((((......)))))).)))).. ( -13.60, z-score = -0.90, R) >droSec1.super_10 1402253 58 - 3036183 GGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAG .(((((((((((((....)))))))..........((((......)))))).)))).. ( -13.60, z-score = -0.90, R) >droSim1.chrX_random 1060968 58 - 5698898 GGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAG .(((((((((((((....)))))))..........((((......)))))).)))).. ( -13.60, z-score = -0.90, R) >consensus GGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAG .(((((((((((((....)))))))..........((((......)))))).)))).. (-13.60 = -13.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:59 2011