Locus 12683

Sequence ID dm3.chrX
Location 1,585,684 – 1,585,785
Length 101
Max. P 0.990993
window17440

overview

Window 0

Location 1,585,684 – 1,585,785
Length 101
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 76.86
Shannon entropy 0.36850
G+C content 0.51540
Mean single sequence MFE -36.28
Consensus MFE -24.76
Energy contribution -25.18
Covariance contribution 0.42
Combinations/Pair 1.10
Mean z-score -2.62
Structure conservation index 0.68
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.45
SVM RNA-class probability 0.990993
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1585684 101 + 22422827
------------------UGACUGGAGCUGGAUCUGGAACUGCAUGCGGAUCUGGAUCGGGACCCCAGAAAUGCGGCUGGCAGAACAGACAAUAGUGUUGGCCGAAUACAAUUGUUCAU
------------------...((((.(((.((((..((.(((....))).))..)))).)).).))))......(((..(((.............)))..)))(((((....))))).. ( -35.72, z-score =  -2.53, R)
>droEre2.scaffold_4644 1572585 94 + 2521924
------------------UGACUGGAGCUGGAUCUGGAACUGCAUGUGGAUCUGGAUCGGGACCGCAGAGACGCGGUU--CUGUA-AGCCAAUA-UCUUGACCAAAUACUGGUCCU---
------------------......(.(((.((((..((.(((....))).))..))))((((((((......))))))--))...-))))....-....(((((.....)))))..--- ( -31.90, z-score =  -1.83, R)
>droYak2.chrX 1438914 113 + 21770863
UGACUGGAGCUGGAUCUGGAACUGCAUGUGGAUCUGGAACUGCAUGUGGAUCUGGAUCGGGACCCCAGAGAUGCGGUU--CUGCA-AGCCAACAAUCUUGGCCGAAUACUGUUCGU---
...((((.(((.((((..((.(..((((..(........)..))))..).))..)))).)).).))))...((((...--.))))-.(((((.....)))))(((((...))))).--- ( -42.60, z-score =  -2.49, R)
>droSec1.super_10 1391076 101 + 3036183
------------------UGACUGGAGCUGGAUCUGGAACUGCAGGCGGAUCUGGAUCGGGACCCCAGAGAUGCGGCUGGCAGAACAGCCAAUAAUAUUGAAUGAAUACUACUGUUCAU
------------------...((((.(((.((((..((.(((....))).))..)))).)).).))))......(((((......)))))...........(((((((....))))))) ( -36.40, z-score =  -3.27, R)
>droSim1.chrX_random 1049648 101 + 5698898
------------------UGACUGGAGCUGGAUCUGGAACUGCAUGCGGAUCUGGAUCGGGACCCCAGAGAUGCGGCUGGCAGAACAGCCAAUAAUAUUGAAUGACUACUACUGUUCAU
------------------...((((.(((.((((..((.(((....))).))..)))).)).).))))......(((((......)))))........((((((........)))))). ( -34.80, z-score =  -3.00, R)
>consensus
__________________UGACUGGAGCUGGAUCUGGAACUGCAUGCGGAUCUGGAUCGGGACCCCAGAGAUGCGGCUGGCAGAACAGCCAAUAAUAUUGACCGAAUACUACUGUUCAU
.....................((((..((.((((..((.(((....))).))..)))).))...))))......(((((......)))))............................. (-24.76 = -25.18 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:53 2011