| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,572,824 – 1,572,925 |
| Length | 101 |
| Max. P | 0.508996 |
| Location | 1,572,824 – 1,572,925 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.95 |
| Shannon entropy | 0.40643 |
| G+C content | 0.49550 |
| Mean single sequence MFE | -33.25 |
| Consensus MFE | -21.96 |
| Energy contribution | -21.52 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1572824 101 - 22422827 CGCAGCCGGAAGUGGAGUGUUUUAAGUGGCACCUAA----------GACAAGUACGAAGGUGCCGAGAUAGAGCCUAAGC--CCUACUUUGGAG-UGGCUCAUUGCUCCCAUAA------ ...........(.(((((........((((((((..----------(.......)..)))))))).....(((((...((--((......)).)-))))))...))))))....------ ( -31.30, z-score = -1.07, R) >droEre2.scaffold_4644 1558328 108 - 2521924 CGCAGCCGGAAGUGGAGUGUUUUAAGUGGCACUUAUCUU--------GUAAGUGCGGAGGUACCGAGUUAGAGCCUAAAUAGGGCUCUUUAG----UGCCCAUUGCUCCCGUGAUCUGUG (((((......(.(((((..........((((((((...--------)))))))).(.(((((..(...(((((((.....))))))))..)----)))))...)))))).....))))) ( -37.80, z-score = -2.20, R) >droYak2.chrX 1426034 116 - 21770863 CGCAGCCGGAAGUGGAGUGCUUUAUGUGGCAUUUAAUUUAAUUUAAGACAAGUACAGAGGUACCGAGAUGGAGCCUAAAUAGGGCUAUUCAG----UGCCCAUUGCUCCUGUGAUCUGUU ((((..(((((((.(((((((......))))))).)))).............(((....))))))....(((((...(((.((((.......----.))))))))))))))))....... ( -30.00, z-score = -0.04, R) >droSec1.super_10 1378373 104 - 3036183 CGCAGCCGGAAGUGGAGUGUUUUGAGUGGCACCUAA----------GACAAGAACGAAGGUGCCGAGAUAAAGCCUAAGUAGGGCUCUUUGGAGCUGGCUCAUUACUCCCAUAA------ ...........(.((((((...((((((((((((..----------(.......)..)))))))..................(((((....))))).))))).)))))))....------ ( -33.90, z-score = -1.24, R) >consensus CGCAGCCGGAAGUGGAGUGUUUUAAGUGGCACCUAA__________GACAAGUACGAAGGUACCGAGAUAGAGCCUAAAUAGGGCUCUUUAG____GGCCCAUUGCUCCCAUAA______ ......(....).(((((((((((..((((((((.......................))))))))...)))))).......((((............))))...)))))........... (-21.96 = -21.52 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:49 2011