| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,640,837 – 9,640,947 |
| Length | 110 |
| Max. P | 0.930573 |
| Location | 9,640,837 – 9,640,947 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.98 |
| Shannon entropy | 0.35822 |
| G+C content | 0.33238 |
| Mean single sequence MFE | -19.36 |
| Consensus MFE | -12.19 |
| Energy contribution | -12.32 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.930573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9640837 110 + 23011544 UCGGAUUUUUGUCUGGUUCAUCUUUUGAACUCUUUUACGGUAUAGUUAAUGCAUAUAUUUAAUUCAGUUGACUUUCACCAAAAUC-UUUUUUGAGUCAGCAAUAUGCCAGC .(((((....)))))(((((.....)))))........((((((((....))..............(((((((.....(((((..-..))))))))))))..))))))... ( -24.60, z-score = -2.66, R) >droSim1.chr2L 9413579 103 + 22036055 UCGGAUUUUCGUCUGGUUCAUCUUUUGAACUCUUUUACGUUAUAGUUAAUGCAUAUAUUUAAUUCUGUUGACUUUCACCAAAAUC-UUUUUUAAGUCAGCAUUA------- .(((((....)))))(((((.....))))).......(((((....)))))..............(((((((((...........-......)))))))))...------- ( -17.73, z-score = -2.47, R) >droSec1.super_3 5087210 110 + 7220098 UCGGAUUUGCGCCUGGUUCAUCUUUUGAACUCUUUUACUUUAUAGUUAAUGCAUUUAUUUAAUUCUGUUGACUUUCACCAAAAUC-UUUUUUAAGUCAGCAUUAUGCCAGC ..((...((((...((((((.....)))))).....(((....)))...))))............(((((((((...........-......))))))))).....))... ( -18.03, z-score = -1.01, R) >droYak2.chr2L 12326232 86 + 22324452 UCUGAUUUUCGCCUGGCACAUCUUUUGAACCCUUU-------------------------AAUUCUGUUGACUUUUACCAAAAUCACUUUUCAAGUCAGCAAUAUGCCAGC ............((((((..((....)).......-------------------------.....(((((((((..................)))))))))...)))))). ( -17.07, z-score = -2.54, R) >consensus UCGGAUUUUCGCCUGGUUCAUCUUUUGAACUCUUUUACGUUAUAGUUAAUGCAUAUAUUUAAUUCUGUUGACUUUCACCAAAAUC_UUUUUUAAGUCAGCAAUAUGCCAGC ..............((((((.....))))))...................................((((((((..................))))))))........... (-12.19 = -12.32 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:41 2011