| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,569,912 – 1,570,007 |
| Length | 95 |
| Max. P | 0.710225 |
| Location | 1,569,912 – 1,570,007 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 86.21 |
| Shannon entropy | 0.23094 |
| G+C content | 0.45318 |
| Mean single sequence MFE | -19.50 |
| Consensus MFE | -15.66 |
| Energy contribution | -15.86 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.676955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1569912 95 + 22422827 GUUAAAGUAUCUCGGUCUCGUACAGCUGUUUAGUGGUCGUUGUGGCGGUCUGGUGUUGGGAGUUCAAAUUCAAAUUCAAAUUCGAGUUCGAGUUC ..........((((..((((..((((...(((((.(((.....))).).)))).)))).(((((........))))).....))))..))))... ( -20.50, z-score = -1.42, R) >droSim1.chrX 1131973 83 + 17042790 GUUAAAGUAUCUCGGUCUCGUACAGCUGUUUAGUGGUCGUUGUGGCUGUCUGGUGUUGGGAGUUCAAAUUCAAAUUCGAGUUC------------ ......(..((((((..(((.(((((..(...(....)...)..))))).)))..))))))...).(((((......))))).------------ ( -18.00, z-score = -1.68, R) >droSec1.super_10 1375489 77 + 3036183 GUUAAAGUAUCUCGGUCUCGUACAGCUGUUUAGUGGUCGUUGUGGCUGUCUGGUGUUGGGAGUUCAAAUUCGAGUUG------------------ ......(..((((((..(((.(((((..(...(....)...)..))))).)))..))))))...)............------------------ ( -16.70, z-score = -1.26, R) >droYak2.chrX 1423108 95 + 21770863 GUUAAAGUAUCUCGGUCUCGUACAGCUGUUUAGUGGUCGUUGUGGCUGUCUGGUGUUGGGAGUUCAAAUUCAAAUUCGAGUUCGAGUUCGAGUUG ......(..((((((..(((.(((((..(...(....)...)..))))).)))..))))))...).(((((.((((((....)))))).))))). ( -25.60, z-score = -2.74, R) >droEre2.scaffold_4644 1554932 83 + 2521924 GUUAAAGUAUCUCGGUCUCGUACAGCUGUUUAGUGGUCGUUGUGGCUGUCUGGUGUUGGGAGUUCAAGUUCAAAUUCGAGUUG------------ ......(..((((((..(((.(((((..(...(....)...)..))))).)))..))))))...)..................------------ ( -16.70, z-score = -0.86, R) >consensus GUUAAAGUAUCUCGGUCUCGUACAGCUGUUUAGUGGUCGUUGUGGCUGUCUGGUGUUGGGAGUUCAAAUUCAAAUUCGAGUUC____________ ......(..((((((..(((.(((((..(...(....)...)..))))).)))..))))))...).............................. (-15.66 = -15.86 + 0.20)
| Location | 1,569,912 – 1,570,007 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 86.21 |
| Shannon entropy | 0.23094 |
| G+C content | 0.45318 |
| Mean single sequence MFE | -11.89 |
| Consensus MFE | -6.95 |
| Energy contribution | -7.39 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.710225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1569912 95 - 22422827 GAACUCGAACUCGAAUUUGAAUUUGAAUUUGAACUCCCAACACCAGACCGCCACAACGACCACUAAACAGCUGUACGAGACCGAGAUACUUUAAC ...((((..((((..((..(((....)))..)).............((.((..................)).)).))))..)))).......... ( -11.67, z-score = -1.75, R) >droSim1.chrX 1131973 83 - 17042790 ------------GAACUCGAAUUUGAAUUUGAACUCCCAACACCAGACAGCCACAACGACCACUAAACAGCUGUACGAGACCGAGAUACUUUAAC ------------...((((..((((...(((......)))......(((((..................))))).))))..)))).......... ( -10.57, z-score = -2.39, R) >droSec1.super_10 1375489 77 - 3036183 ------------------CAACUCGAAUUUGAACUCCCAACACCAGACAGCCACAACGACCACUAAACAGCUGUACGAGACCGAGAUACUUUAAC ------------------...((((...(((......)))......(((((..................))))).))))................ ( -9.07, z-score = -2.13, R) >droYak2.chrX 1423108 95 - 21770863 CAACUCGAACUCGAACUCGAAUUUGAAUUUGAACUCCCAACACCAGACAGCCACAACGACCACUAAACAGCUGUACGAGACCGAGAUACUUUAAC ...((((..((((...((((((....))))))..............(((((..................))))).))))..)))).......... ( -17.67, z-score = -4.00, R) >droEre2.scaffold_4644 1554932 83 - 2521924 ------------CAACUCGAAUUUGAACUUGAACUCCCAACACCAGACAGCCACAACGACCACUAAACAGCUGUACGAGACCGAGAUACUUUAAC ------------...((((..((((...(((......)))......(((((..................))))).))))..)))).......... ( -10.47, z-score = -2.27, R) >consensus ____________GAACUCGAAUUUGAAUUUGAACUCCCAACACCAGACAGCCACAACGACCACUAAACAGCUGUACGAGACCGAGAUACUUUAAC ...............((((..((((...(((......)))......(((((..................))))).))))..)))).......... ( -6.95 = -7.39 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:48 2011