| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,568,571 – 1,568,715 |
| Length | 144 |
| Max. P | 0.535739 |
| Location | 1,568,571 – 1,568,715 |
|---|---|
| Length | 144 |
| Sequences | 7 |
| Columns | 177 |
| Reading direction | forward |
| Mean pairwise identity | 62.96 |
| Shannon entropy | 0.66257 |
| G+C content | 0.49505 |
| Mean single sequence MFE | -47.24 |
| Consensus MFE | -18.72 |
| Energy contribution | -19.17 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535739 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1568571 144 + 22422827 CCCAUUUGAUAGGUGCAGCAUGUAA--ACAA-UAGAACCGUCGGUAGUCCGAUGGGCACCA-GCACUCUCCGCC--AAUCCGGUCGGGAAUAACGAGCUGAGGCCUCCACUACGCAGUGGCUGGAGGGAGUGCUGUUUGUCGCUUCUCUU--------------------------- .......(((((((((....((...--.)).-.....(((((((....))))))))))))(-(((((((..(((--..((.(.(((.......))).).)))))(((((((((...)))).)))))))))))))...)))).........--------------------------- ( -53.90, z-score = -1.52, R) >droEre2.scaffold_4644 1553658 140 + 2521924 CCCAUUUGAUAGGUGCAGCAUGUAA--ACAA-UAGAACCGUCGGUAGUCCGAUGGGCACAA-GCACUCUCCGCA--AUUCCAGCCGGGAAUAACGAGCUGUGGCCUCCUUUAGG----AGCAGGAGGGAGUGCUCUUUGUGGCUUCUUGU--------------------------- .((((..((...((((....((...--.)).-.....(((((((....)))))))))))..-((((((.(((((--(((((.....))))).......)))))((((((.....----...))))))))))))))...))))........--------------------------- ( -48.41, z-score = -0.86, R) >droYak2.chrX 1421747 138 + 21770863 CCCAUUUGAUAGGUGCAGCAUGUAA--ACAA-UAGAACCGUCGGUAGUCCGAUGGGCACAA-GCACUCUCCGCACUAUUCCUACCGUGAAUAACGAGAUGGGGCCUCCUUUAGG----AGCAG----GAGUGCUGUUAGUGGCUUCUUGU--------------------------- .(((((.(((..((((....((...--.)).-.....(((((((....))))))))))).(-(((((((..((.....(((((((((.....))).).)))))..(((....))----))).)----)))))))))))))))........--------------------------- ( -44.90, z-score = -0.96, R) >droSec1.super_10 1374108 144 + 3036183 CCCAUUUGAUAGGUGCAGCAUGUAA--ACAA-GAGAACCGUCGGUAGUCCGAUGGGCACCA-GCACUCUCCGCC--UAUCCUGUCGGGAAUAACGAGCUGAGGGCUCCACUACGCAGUGGCUGGAGGGAGUGCUGUUUGUGGCUUCUCUU--------------------------- .((((..(((.(((((....((...--.)).-.....(((((((....))))))))))))(-((((((.(((((--(.((...(((.......)))...))))))((((((((...)))).)))))))))))))))).))))........--------------------------- ( -53.40, z-score = -0.87, R) >droSim1.chrX 1130597 144 + 17042790 CCCAUUUGAUAGGUGCAGCAUGUAA--ACAA-UAGAACCGUCGGUAGUCCGAUGGGCACCA-GCACUCUCCGCC--AAUCCUGUCGGGAAUAACGAGCUGAGGCCUCCACUACGCAGUGGCUGGAGGGAGUGCUGUUUGUGGCUUCUCUU--------------------------- .((((..(((.(((((....((...--.)).-.....(((((((....))))))))))))(-((((((((((.(--(....)).))))...............((((((((((...)))).)))))))))))))))).))))........--------------------------- ( -52.50, z-score = -1.08, R) >dp4.chrXL_group1a 4731178 171 - 9151740 CCCAUUUGAUAGGCGCAUCGUUUAA--ACAAAUAACAUUUUUGGUAGUCCAAAAUGAACCACACCCUUUCCAAAUCUUGAUCCAACUUAAGGCCCUUUGGAAGGAGUAUGUAUG----UACAUAAGUGUGUGGUGUAUGGUGUAUGGUGUAUGUUGUUUAUGUGUUGUGUUUUUUUU ..........(((((((.((..(((--((((...((((((((((....)))))(((.(((((((.(((((((((((((((......))))))...)))))))))..(((((...----.)))))...))))))).))).......)))))...)))))))..)).)))))))..... ( -45.10, z-score = -1.62, R) >droVir3.scaffold_13042 5120189 142 + 5191987 CCCAUUUAAUGGGAGUACGGUAUAACCAUAAACAUUCCUUUCCGUAAUCCCGAGAGAAUUG-ACUCUUCCCAGAAC-----------GAAUGCACCUUAGAAGCAGAUUAUUGG----UUUUCAAGGAAACGCUUUUUGGGAAUUGCUUUAGGCUUUU------------------- .((......(((((.(((((.....................))))).)))))((((.....-.))))((((((((.-----------(......((((..((((.........)----)))..)))).....).)))))))).........)).....------------------- ( -32.50, z-score = -0.43, R) >consensus CCCAUUUGAUAGGUGCAGCAUGUAA__ACAA_UAGAACCGUCGGUAGUCCGAUGGGCACCA_GCACUCUCCGCA__AAUCCUGUCGGGAAUAACGAGCUGAGGCCUCCUCUACG____GGCUGGAGGGAGUGCUGUUUGUGGCUUCUUUU___________________________ ...........(((((....(((....))).......(((((((....))))))))))))..((((((((........(((....)))......(((.......)))..................))))))))............................................ (-18.72 = -19.17 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:46 2011