| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,568,023 – 1,568,122 |
| Length | 99 |
| Max. P | 0.740784 |
| Location | 1,568,023 – 1,568,122 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 61.16 |
| Shannon entropy | 0.60687 |
| G+C content | 0.47975 |
| Mean single sequence MFE | -32.12 |
| Consensus MFE | -13.88 |
| Energy contribution | -13.60 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1568023 99 + 22422827 ------------UGUGGCAUGGUGUUAGAUCUUAUGCUACGGCGCUCGUCCUAUGUGU-GAAGUUCGCUCCGCUCCCG-AAUGAAUCAGGAUCGGUGUGGCGAACU-CAGCAGA- ------------.(((((((((.(......))))))))))(((....))).....(((-..(((((((((((.(((.(-(.....)).))).)))...))))))))-..)))..- ( -33.60, z-score = -0.90, R) >droSec1.super_10 1373596 99 + 3036183 ------------UGUGGCAUGGUGUUAGAUCUUAUGCUACGGCGCUCGUCCUAUGUGU-GAAGUUCCCUCCGCUCCCG-AAUGAAUCGGGAUCGGUGUGGCGAACU-UAGCAGA- ------------.(((((((((.(......))))))))))(((....))).....(((-.((((((((.(((.(((((-(.....)))))).)))...)).)))))-).)))..- ( -37.50, z-score = -2.42, R) >droSim1.chrX 1130086 99 + 17042790 ------------UGUGGCAUGGUGUUAGAUCUUAUGCUACGGCGCUCGUCCUAUGUGU-GAAGUUCCCUCCGCUCCCG-AACGAAUCGGGAUCGGUGUGGCGAACU-UAGCAGA- ------------.(((((((((.(......))))))))))(((....))).....(((-.((((((((.(((.(((((-(.....)))))).)))...)).)))))-).)))..- ( -37.50, z-score = -2.17, R) >dp4.chrXL_group1a 4730481 115 - 9151740 UUUAUUUUCGAUUGAGUUCUUAUGCUAACACACGCUUGAAAACGGAUUUUUAAUUCGUUGACAUUGUUUCCGUUUUCACAAAAGAAAGGAAUUGGCGCUGCGCUCUGCUGCGUAC ........(((((...(((((..((........)).((((((((((....((((........))))..))))))))))...)))))...)))))((((.((.....)).)))).. ( -26.00, z-score = -0.63, R) >droPer1.super_11 1846542 115 - 2846995 UUUAUUUUCGAUUGAGUUCUUAUGCUAACACACGCUUGAAAACGGAUUUUUAAUUCGUUGACAUUGUUUCCGUUUUCACAAAAGAAAGGAAUUGGCGCUGCGCUCUGCUGCGUAC ........(((((...(((((..((........)).((((((((((....((((........))))..))))))))))...)))))...)))))((((.((.....)).)))).. ( -26.00, z-score = -0.63, R) >consensus ____________UGUGGCAUGGUGUUAGAUCUUAUGCUACGGCGCUCGUCCUAUGUGU_GAAGUUCCCUCCGCUCCCG_AAAGAAUCGGGAUCGGUGUGGCGAACU_CAGCAGA_ .............(((.(.((((((........)))))).).)))..........(((...(((((.(..((((((((........)))))...)))..).)))))...)))... (-13.88 = -13.60 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:45 2011