| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,556,021 – 1,556,076 |
| Length | 55 |
| Max. P | 0.946749 |
| Location | 1,556,021 – 1,556,076 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 85.19 |
| Shannon entropy | 0.22549 |
| G+C content | 0.49619 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -12.13 |
| Energy contribution | -11.94 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1556021 55 + 22422827 CUAAUAACGAACUAGGCAUUGGUGACCAGCG-------AUCACUGGUCAGCAUGAGGUUUCC ........(((((...(((.(.(((((((..-------....))))))).)))).))))).. ( -16.50, z-score = -2.11, R) >droEre2.scaffold_4644 1541295 62 + 2521924 GUGCAGUCGAAAUAGGCAUUGGUGAUCAGCGGUCGGCGAUCACUGGUCACCAUGAGGUUUCC ........(((((...(((.(((((((((.((((...)))).))))))))))))..))))). ( -24.50, z-score = -2.99, R) >droSec1.super_10 1361675 55 + 3036183 CUAAUAACUAACUAGGCAUUGGUGACCAGCG-------AUCACUGGUCAGCAUGAGGUUUCC .........((((...(((.(.(((((((..-------....))))))).)))).))))... ( -15.10, z-score = -1.60, R) >droSim1.chrX_random 1025217 55 + 5698898 CUAAUAACUAACUAGGCAUUGGUGACCAGCG-------AUCACUGGUCAGCAUGAGGUUUCC .........((((...(((.(.(((((((..-------....))))))).)))).))))... ( -15.10, z-score = -1.60, R) >consensus CUAAUAACGAACUAGGCAUUGGUGACCAGCG_______AUCACUGGUCAGCAUGAGGUUUCC .............((((..((.(((((((.............))))))).))....)))).. (-12.13 = -11.94 + -0.19)
| Location | 1,556,021 – 1,556,076 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 85.19 |
| Shannon entropy | 0.22549 |
| G+C content | 0.49619 |
| Mean single sequence MFE | -15.70 |
| Consensus MFE | -13.18 |
| Energy contribution | -13.43 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1556021 55 - 22422827 GGAAACCUCAUGCUGACCAGUGAU-------CGCUGGUCACCAAUGCCUAGUUCGUUAUUAG .(((....(((..((((((((...-------.))))))))...))).....)))........ ( -15.40, z-score = -2.18, R) >droEre2.scaffold_4644 1541295 62 - 2521924 GGAAACCUCAUGGUGACCAGUGAUCGCCGACCGCUGAUCACCAAUGCCUAUUUCGACUGCAC .((((...((((((((.(((((.((...)).))))).))))).)))....))))........ ( -16.60, z-score = -1.96, R) >droSec1.super_10 1361675 55 - 3036183 GGAAACCUCAUGCUGACCAGUGAU-------CGCUGGUCACCAAUGCCUAGUUAGUUAUUAG (....)....((.((((((((...-------.)))))))).))....(((((.....))))) ( -15.40, z-score = -2.13, R) >droSim1.chrX_random 1025217 55 - 5698898 GGAAACCUCAUGCUGACCAGUGAU-------CGCUGGUCACCAAUGCCUAGUUAGUUAUUAG (....)....((.((((((((...-------.)))))))).))....(((((.....))))) ( -15.40, z-score = -2.13, R) >consensus GGAAACCUCAUGCUGACCAGUGAU_______CGCUGGUCACCAAUGCCUAGUUAGUUAUUAG (....)....((.(((((((((.........))))))))).))................... (-13.18 = -13.43 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:43 2011