| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,552,948 – 1,553,056 |
| Length | 108 |
| Max. P | 0.542414 |
| Location | 1,552,948 – 1,553,056 |
|---|---|
| Length | 108 |
| Sequences | 7 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.95 |
| Shannon entropy | 0.39228 |
| G+C content | 0.67681 |
| Mean single sequence MFE | -41.19 |
| Consensus MFE | -24.87 |
| Energy contribution | -27.96 |
| Covariance contribution | 3.09 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1552948 108 + 22422827 AGCCUACACAGUCACGCCCACGGCCAUGUCCUUGGGCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAAUCUCUGCACCUCCACCUCC .((((((((.((...(((((((((..((((....)))).))).....((.((((.....)))).)))))))).)).)))))))).(((.....)))............ ( -47.00, z-score = -1.99, R) >droSim1.chrX_random 1022114 108 + 5698898 AGCCUACAUAGCCACGCCCACGGUCAUGUCCUUGGCCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAACCUCUGCACCUCCACCUCC .((((((((.((...(((((((((((......)))))..((((...(((....)))...))))...)))))).)).)))))))).(((.....)))............ ( -48.00, z-score = -2.84, R) >droSec1.super_10 1358613 108 + 3036183 AGCCUACAUAGCCACGCCCACGGCCAUGUCCUUGGACACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAACCUCUGCACCUCCACCUCC .((((((((.((...(((((((((..((((....)))).))).....((.((((.....)))).)))))))).)).)))))))).(((.....)))............ ( -48.40, z-score = -2.85, R) >droYak2.chrX 1406186 108 + 21770863 AGCCUACACAGCCACGCCCACGGCCAUGUCCUGGGCCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAAUCUCUGCACCUCCACCUCC .((((((((.((...((((((((((........))))..((((...(((....)))...))))...)))))).)).)))))))).(((.....)))............ ( -49.50, z-score = -2.40, R) >droEre2.scaffold_4644 1538143 108 + 2521924 AGCCUACAAAGCCACGCCCACGGCCAUGUCCUGGGCCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAACCUGUGCACCUCCACCUCC .(((((((..((...((((((((((........))))..((((...(((....)))...))))...)))))).))..))))))).(((.....)))............ ( -47.40, z-score = -1.21, R) >droAna3.scaffold_12929 1423127 108 + 3277472 AAUCUCCACAGCCACGCCCAUGCCGUCGUCCUGAAGCACGCCACCUCGCCCCCACGCCCCGGCAGCGUUGGCAGCAGUCUUGGCAGCAAUCUCUGCACCUCCUCCUCA ..........(((((((...(((((..((......((..........))......))..)))))))).)))).((((..(((....)))...))))............ ( -25.60, z-score = 0.11, R) >droWil1.scaffold_181150 4603852 81 + 4952429 -----------------------AAUCUGCAUGCGGCACACAAC-UCACCGCCACGUCCCGGCAGUGUGGGCAGCAGUGUGGCCAGCAAUCUCUGCUCCUCAUCC--- -----------------------.....(((((((((.((((.(-((((((((.......))).).)))))......))))))).))).....))).........--- ( -22.40, z-score = 0.95, R) >consensus AGCCUACACAGCCACGCCCACGGCCAUGUCCUGGGCCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAAUCUCUGCACCUCCACCUCC .((((((((.((...(((((((((...............))).....((.(((.......))).)))))))).)).)))))))).(((.....)))............ (-24.87 = -27.96 + 3.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:41 2011