Locus 12671

Sequence ID dm3.chrX
Location 1,550,286 – 1,550,373
Length 87
Max. P 0.647543
window17422

overview

Window 2

Location 1,550,286 – 1,550,373
Length 87
Sequences 4
Columns 89
Reading direction reverse
Mean pairwise identity 92.23
Shannon entropy 0.12274
G+C content 0.39997
Mean single sequence MFE -23.07
Consensus MFE -21.10
Energy contribution -21.91
Covariance contribution 0.81
Combinations/Pair 1.04
Mean z-score -1.35
Structure conservation index 0.91
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.33
SVM RNA-class probability 0.647543
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1550286 87 - 22422827
UUAGUGCCAAGCUGACCAUAUACUGAC--UGAUGUUGCGCAGUGGUUGGUCGGGUUAAUUGUUUUCAUCUAGAAACAAUUUGUACAGAU
...((((.((.(((((((..(((((..--..........)))))..))))))).))(((((((((......))))))))).)))).... ( -24.40, z-score =  -1.72, R)
>droEre2.scaffold_4644 1535481 87 - 2521924
UUAGUGCCAAGCUAACCAUACACUGAC--UGAUUUUGCACAGUGGCUGGUCGGGUUAAUUGUUUUCAUCUAGAAACAAUUUGUACAGAU
...((((.((.(..((((..(((((..--((......)))))))..))))..).))(((((((((......))))))))).)))).... ( -22.20, z-score =  -1.46, R)
>droYak2.chrX 1403487 89 - 21770863
UUAGUGCCAAGCUGACCAUAUACUGACUGUGAUUUUGCACAGUGGCUGGCCGGGUUAAUUGUUUUCAUCUAGAAACAAUUUGUACAGAU
...((((.....(((((........((((((......))))))((....)).)))))((((((((......))))))))..)))).... ( -22.20, z-score =  -0.87, R)
>droSec1.super_10 1355997 87 - 3036183
UUAGUGCCAAGCUGACCAUAUACUGAC--UGAUUUUGCGCAGUGGUUGGUCGGGUUAAUUGUUCUUGUAUAGAAACAAUGUGUACAGAU
...(((((((.(((((((..(((((..--..........)))))..))))))).)).((((((((.....)).))))))).)))).... ( -23.50, z-score =  -1.35, R)
>consensus
UUAGUGCCAAGCUGACCAUAUACUGAC__UGAUUUUGCACAGUGGCUGGUCGGGUUAAUUGUUUUCAUCUAGAAACAAUUUGUACAGAU
...((((.((.(((((((..(((((..............)))))..))))))).))(((((((((......))))))))).)))).... (-21.10 = -21.91 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:38 2011