| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,549,648 – 1,549,755 |
| Length | 107 |
| Max. P | 0.569094 |
| Location | 1,549,648 – 1,549,755 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.29 |
| Shannon entropy | 0.28010 |
| G+C content | 0.40229 |
| Mean single sequence MFE | -25.24 |
| Consensus MFE | -16.07 |
| Energy contribution | -17.95 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1549648 107 + 22422827 ---------CAAUAUAAAUCGACGACAAUAGUUGAUAAUGAAAGUAA-GGCGCAAGAAUAUAACUUAGGUGUAAGUCCCCAGUUUGCCGAUCAACUUGUGCCUAGAGCUAUAGAUGU ---------........((((((.......))))))......(((.(-((((((((.....((((..((.......))..))))..........)))))))))...)))........ ( -20.76, z-score = -0.92, R) >droEre2.scaffold_4644 1534822 107 + 2521924 ---------CAAUAUAACUCGACGACGAUAGUUGAUAAUGAAAUUAA-GGCGCAAGAAUAAAACUUAGGAGUAAGUCCCCAGUUUGCCGAUCGACUUGUGCCUAGAGCUAUAAAUGU ---------...((((.(((..((((....))))............(-((((((((....(((((..(((.....)))..)))))..(....).))))))))).))).))))..... ( -26.20, z-score = -2.81, R) >droYak2.chrX 1402784 116 + 21770863 CAAUAUAACUCAUAUAACUCGACAACGUUAGUUGAUAAUGAAAGUAA-GGCGCAAGAAUAAAACUUAGGAGUAAGUCCCCAGUUUGCCGAUCGACUUGUGCCUAGAGCUAUAGAUGU .......((...((((.(((..((((....))))............(-((((((((....(((((..(((.....)))..)))))..(....).))))))))).))).))))...)) ( -27.00, z-score = -2.14, R) >droSec1.super_10 1355365 101 + 3036183 ---------CAAU-UUACUCGACUACGAUGGUUGGUAAUGAAAGUAAAGGCGCAAGAU----AUCUAGAGCGACAUCCCCAGUU-GCCGAUC-ACUUGUGCCUAGAGCUAUAGAUGU ---------....-((((.(((((.....)))))))))....(((..(((((((((..----(((..(.(((((.......)))-)))))).-.)))))))))...)))........ ( -27.00, z-score = -1.69, R) >consensus _________CAAUAUAACUCGACGACGAUAGUUGAUAAUGAAAGUAA_GGCGCAAGAAUAAAACUUAGGAGUAAGUCCCCAGUUUGCCGAUCGACUUGUGCCUAGAGCUAUAGAUGU ............((((.(((..((((....))))..............((((((((....(((((..(((.....)))..))))).........))))))))..))).))))..... (-16.07 = -17.95 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:37 2011