| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,632,716 – 9,632,809 |
| Length | 93 |
| Max. P | 0.994312 |
| Location | 9,632,716 – 9,632,809 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 62.71 |
| Shannon entropy | 0.72336 |
| G+C content | 0.53575 |
| Mean single sequence MFE | -33.30 |
| Consensus MFE | -16.90 |
| Energy contribution | -17.26 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.69 |
| SVM RNA-class probability | 0.994312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9632716 93 - 23011544 CAAUAGGGCAAACGAAGGCAGACCCCUGGCAGCUGUUGUUGUCUAGUUGGGUCAGAUUUUUGGGGCUCGGUAUCCAAGCUGAUCCGGCUGCUC------------ .....(((((..((..(((.(((((((((((((....)))).))))..)))))......(((((........))))))))....))..)))))------------ ( -32.20, z-score = -0.67, R) >droAna3.scaffold_12943 1059269 102 - 5039921 CUAGGGAAACACUAGCAGCCGACCUGCGGCAGCUGUUGCUGCCCAAU--AUUUUGGGUCUUGGCCCCCAGUCUCC-GGCUGGUGUGCCGGCUGGUUUUUCCACUG .((((((((.((((((....((((...((((((....))))))(((.--...))))))).(((((.(((((....-.))))).).)))))))))).))))).))) ( -47.50, z-score = -3.21, R) >droEre2.scaffold_4929 10239671 91 - 26641161 CAAGAGGGCAACCGAAAGCGGACCCCUGGCAGCUGUUGUUGUCUAGUUGGGUCCGAUUUU--GGGCUCGGUAUCCAAGCUGAUCCGGCUGCGC------------ .....(.(((.((((((.(((((((((((((((....)))).))))..))))))).))))--))((.(((.(((......))))))))))).)------------ ( -39.50, z-score = -2.33, R) >droYak2.chr2L 12318037 93 - 22324452 CAAGAGGGCCAACGAAAGCGAACCCCUGGCAGCUGUUGUUGUCUAGUUGGGUUCGAUUUUUGGGGCUCGGUAUCCAAGCCGAUCCGGCUGCUC------------ ...(((((((..(((((((((((((((((((((....)))).))))..))))))).))))))(((.(((((......)))))))))))).)))------------ ( -42.10, z-score = -3.42, R) >droSec1.super_3 5079191 90 - 7220098 ---CAGCUCAAACGAAAGCAGACCCCUGGCAGCUGUUGUUGUCUAGUUGGGUCCGAUUUUUGGGGCUCGGUAUCCAAGCUGAUCCGCCUGCUC------------ ---.(((.....(((((((.(((((((((((((....)))).))))..))))).).))))))(((((((((......)))))...))))))).------------ ( -31.20, z-score = -1.16, R) >droSim1.chr2L 9405460 93 - 22036055 UAAGGGGGCAAACGAAAGCAGACCCCUGGCAGCUGUUGUUGUCUAGUUGGGUCCGAUUUUCGGGGCUCGGUAUACAAGCUGAUCCGCCAGCUC------------ ..((..(((...(((((((.(((((((((((((....)))).))))..))))).).))))))(((.(((((......)))))))))))..)).------------ ( -35.80, z-score = -1.71, R) >droWil1.scaffold_180708 3353292 89 + 12563649 ---------AAACCAAACCAGACACAAGAAAACCGCUGCUACUC--UUAGCUUAUAUUGUUAUUAUUAAUAUUUUAGAAAACAACCUUUGCCAGAUGUUG----- ---------...........(((((............((((...--.))))......(((((....)))))......................).)))).----- ( -4.80, z-score = 1.34, R) >consensus CAAGAGGGCAAACGAAAGCAGACCCCUGGCAGCUGUUGUUGUCUAGUUGGGUCCGAUUUUUGGGGCUCGGUAUCCAAGCUGAUCCGCCUGCUC____________ .................((((((((..((((((....)))))).....))))).........(((.(((((......))))))))...))).............. (-16.90 = -17.26 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:40 2011