Locus 12669

Sequence ID dm3.chrX
Location 1,547,713 – 1,547,850
Length 137
Max. P 0.590905
window17420

overview

Window 0

Location 1,547,713 – 1,547,850
Length 137
Sequences 3
Columns 137
Reading direction reverse
Mean pairwise identity 95.61
Shannon entropy 0.06033
G+C content 0.56725
Mean single sequence MFE -45.87
Consensus MFE -44.93
Energy contribution -44.93
Covariance contribution 0.01
Combinations/Pair 1.07
Mean z-score -0.96
Structure conservation index 0.98
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.20
SVM RNA-class probability 0.590905
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1547713 137 - 22422827
AAGGUUGGGUGACAUUGGAUUAAUAUAGCGAUCUGGUGUUAGGCCGGGGGGUUUGGCGAGACAGGGGCGAGACUGAGAGCGACCAUGCCAGGGUUAGGCGGCAUUCUGCGCUCAAUGGGGUGGGUGCGUUGUUGUUU
..((((...((((((..((((........))))..))))))))))....(((.(((((...(((........)))....)).))).)))......((((((((...((((((((......)))))))).)))))))) ( -43.30, z-score =  -0.70, R)
>droSim1.chrX_random 1017226 136 - 5698898
AAGGUUGGGUGACAUUGGAUUAAUAUAGCGAUCUGGUGUUAGGCCUCGGGGUUCGGCGAGACGGGGGCGAGACUGAGAGCGACCAUGCCAGGGUUAGGCGGCAUUCUGCGCUCGA-AAGGUGGGUGCGUUGUUGUUU
..((((((.((((((..((((........))))..)))))).(((((((..((((.(........).)))).))))).))..))).)))......((((((((...((((((((.-....)))))))).)))))))) ( -48.30, z-score =  -1.54, R)
>droSec1.super_10 1353374 136 - 3036183
AAGGUUGGGUGACGUUGGAUUAAUAUAGCGAUCUGGUGUUAGGCCUCGGGGUUCGGCGAGACGGGGGCGAGACUGAGAGCGACCAUGCCAGGGUUAGGCGGCAUUCUGCGCUCGA-AAGGUGGGUGCGUUGUUGUUU
..((((((.(((((..(((((........)))))..))))).(((((((..((((.(........).)))).))))).))..))).)))......((((((((...((((((((.-....)))))))).)))))))) ( -46.00, z-score =  -0.63, R)
>consensus
AAGGUUGGGUGACAUUGGAUUAAUAUAGCGAUCUGGUGUUAGGCCUCGGGGUUCGGCGAGACGGGGGCGAGACUGAGAGCGACCAUGCCAGGGUUAGGCGGCAUUCUGCGCUCGA_AAGGUGGGUGCGUUGUUGUUU
..((((((.((((((..((((........))))..)))))).(((((((..((((.(........).)))).))))).))..))).)))......((((((((...((((((((......)))))))).)))))))) (-44.93 = -44.93 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:36 2011