| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,538,042 – 1,538,105 |
| Length | 63 |
| Max. P | 0.994020 |
| Location | 1,538,042 – 1,538,105 |
|---|---|
| Length | 63 |
| Sequences | 4 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 94.26 |
| Shannon entropy | 0.09014 |
| G+C content | 0.40429 |
| Mean single sequence MFE | -13.90 |
| Consensus MFE | -13.90 |
| Energy contribution | -13.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.52 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.66 |
| SVM RNA-class probability | 0.994020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1538042 63 - 22422827 ACUGUGUGUAUGUAUGUGCACAUUCGCUUCCUUCGUCCUGGUCUUUAAUAGUUAAUGUGUACA ..............((((((((((.(((.((........))........))).)))))))))) ( -13.90, z-score = -2.16, R) >droSim1.chrX 1116994 59 - 17042790 ----ACUGUGUGUAUGUGCACAUUCGCUUCCUUCGUCCUGGUCUUUAAUAGUUAAUGUGUACA ----..........((((((((((.(((.((........))........))).)))))))))) ( -13.90, z-score = -2.64, R) >droYak2.chrX 1390712 59 - 21770863 ----ACUGUGUGUAUGUGCACAUUCGCUUCCUUCGUCCUGGUCUUUAAUAGUUAAUGUGUACA ----..........((((((((((.(((.((........))........))).)))))))))) ( -13.90, z-score = -2.64, R) >droEre2.scaffold_4644 1522665 59 - 2521924 ----ACUGUGUGUAUGUGCACAUUCGCUUCCUUCGUCCUGGUCUUUAAUAGUUAAUGUGUACA ----..........((((((((((.(((.((........))........))).)))))))))) ( -13.90, z-score = -2.64, R) >consensus ____ACUGUGUGUAUGUGCACAUUCGCUUCCUUCGUCCUGGUCUUUAAUAGUUAAUGUGUACA ..............((((((((((.(((.((........))........))).)))))))))) (-13.90 = -13.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:32 2011