| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,534,344 – 1,534,410 |
| Length | 66 |
| Max. P | 0.845618 |
| Location | 1,534,344 – 1,534,410 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 92.77 |
| Shannon entropy | 0.11461 |
| G+C content | 0.52618 |
| Mean single sequence MFE | -25.22 |
| Consensus MFE | -20.83 |
| Energy contribution | -20.70 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1534344 66 + 22422827 ACUCACAAGGGGGUCC-GUGAGGUAAACUUGAUAGAAGGGGUAAGCCCUUCGCCUCUUUGAGUAGUC (((((.((((((..((-....))...........((((((.....)))))).))))))))))).... ( -26.20, z-score = -2.74, R) >droEre2.scaffold_4644 1518933 67 + 2521924 ACUCACAAGGGGGCCCCGUGAGGUAAUCUUGAUAGAAGGGGCAAGCCCUUCGCCUUUUUGAGUAGUC (((((..(((((((.((....))...........((((((.....)))))))))))))))))).... ( -25.60, z-score = -1.92, R) >droYak2.chrX 1387022 67 + 21770863 ACUCACAAGGGGGCCCCGUGAGGUGAUCUUGAUAGAAUGGGCAAGCCCUUCGCCUCUUUGAGUAGUC (((((..(((((((.((....))...........(((.(((....)))))))))))))))))).... ( -25.40, z-score = -1.72, R) >droSim1.chrX 1113296 66 + 17042790 ACUCACAAGGGGAUCC-GUGAGGUAAUCUUGAUAGAAGGGGCAAGUCCUUCGCCUCUUUGAGUAGUC ((((.(((((....((-....))...)))))...((((((((.........)))))))))))).... ( -23.70, z-score = -2.26, R) >consensus ACUCACAAGGGGGCCC_GUGAGGUAAUCUUGAUAGAAGGGGCAAGCCCUUCGCCUCUUUGAGUAGUC (((((.((((((.....((.(((....))).)).((((((.....)))))).))))))))))).... (-20.83 = -20.70 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:31 2011