| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,518,957 – 1,519,012 |
| Length | 55 |
| Max. P | 0.939441 |
| Location | 1,518,957 – 1,519,012 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 90.77 |
| Shannon entropy | 0.15498 |
| G+C content | 0.51096 |
| Mean single sequence MFE | -19.98 |
| Consensus MFE | -18.08 |
| Energy contribution | -19.32 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.939441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1518957 55 - 22422827 AUACAGUCUCGCAAGAAGAUUGCUGCAUCCGCUGCAACUGUGAAUGUGUGAAU-UG .(((((((((....).)))((((.((....)).)))))))))...........-.. ( -13.10, z-score = -0.72, R) >droEre2.scaffold_4644 1511242 56 - 2521924 ACACAGUCUCGCGCGCAGAUUGCCGCAUCCGCUGCAACUGUGAAUGUGUCAGUGUG .((((.(..(((.(((((.((((.((....)).)))))))))...)))..).)))) ( -20.30, z-score = -1.21, R) >droSec1.super_10 1335486 56 - 3036183 ACACAGACUCGCAUGCAGAUUGCUGCAUCCGCUGCAACUGUGAAUGUGUGAUUGUG .(((((.(.(((((((((.((((.((....)).))))))))..))))).).))))) ( -20.40, z-score = -2.12, R) >droSim1.chrX 1110118 56 - 17042790 ACACAGUCUCGCACGCAGAUUGCUGCAUCCGCUGCAACUGUGAAUGUGUGAUUGUG .(((((((.(((((((((.((((.((....)).)))))))))..)))).))))))) ( -26.10, z-score = -3.97, R) >consensus ACACAGUCUCGCACGCAGAUUGCUGCAUCCGCUGCAACUGUGAAUGUGUGAUUGUG .(((((((.(((((((((.((((.((....)).)))))))))..)))).))))))) (-18.08 = -19.32 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:29 2011