| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,489,207 – 1,489,299 |
| Length | 92 |
| Max. P | 0.717050 |
| Location | 1,489,207 – 1,489,299 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 66.82 |
| Shannon entropy | 0.64059 |
| G+C content | 0.54199 |
| Mean single sequence MFE | -20.31 |
| Consensus MFE | -9.20 |
| Energy contribution | -8.94 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1489207 92 + 22422827 ------UGGCAGCGAAAUAGUCGCAGAUGCUGUUGCUGUAAGUUU-CACGCAGC---------AAACUGCCGAAACCCAUCCAUCCGC-CCACAGCAGCCCUUCCCCUC------ ------.(((.((((.....))))...((((((.((.(...((((-(..((((.---------...)))).)))))........).))-..))))))))).........------ ( -25.00, z-score = -2.12, R) >droSec1.super_430 7849 92 - 11758 ------CGGCAGCGAAAUAGUCGCAGAUGCUGUUGCUGUAAGUUU-CACGCAGC---------AAACUGUCGAAACCCAUCCAUCCGC-CCACAGCAGCCCUUCCCCGC------ ------.(((.((((.....))))...((((((.((.(...((((-(..((((.---------...)))).)))))........).))-..))))))))).........------ ( -23.60, z-score = -1.31, R) >droYak2.chrX 1362466 106 + 21770863 ------CGGCAGCAAAAUAGUCGCAGAUGCUGUUGCUGUAAGUUU-CACGCAGCUAAAAAAGCAAACUGCCGAAACCCAUCCAUCCGC-CCACAGCAGCCCCUGCCCUUCCCUC- ------.(((((..........((....)).((((((((..((((-(..((((.............)))).))))).....(....).-..))))))))..)))))........- ( -24.62, z-score = -1.39, R) >droEre2.scaffold_4644 1481675 106 + 2521924 ------CGGCAGCAAAAUAGUCGCAGAUGCUGUUGCUGUAAGUUU-CACGCAGCUAAAAAAGCAAACUGCCGAAACCCAUCCAUCCGC-CCACAGCAGCCCCUCCCCUCGCCGC- ------((((((((.............))))((((((((..((((-(..((((.............)))).))))).....(....).-..))))))))..........)))).- ( -23.94, z-score = -0.90, R) >droAna3.scaffold_12929 1357178 88 + 3277472 ------CGGCAGCGAAAUAGUCGCAGAUGCUGUUGCUGUAAGUUU-CACGCAGCUAAAAAAGCAAACUGCCGAAACCCAAACUCAAAC-CCACACC------------------- ------(((((((((.....))))...((((.(((((((......-...))))).))...))))...)))))................-.......------------------- ( -22.40, z-score = -2.11, R) >droWil1.scaffold_181150 4512210 73 + 4952429 ------CGACAGCGAAAUAGUCGCAGAUGCUGUUGCUGUAAGUUU---UCUAACC-----------UCCCCGCGCCCUAAACCUCCCCCCCGC---------------------- ------.....(((..(((((.((((...)))).)))))..(((.---...))).-----------....)))....................---------------------- ( -10.60, z-score = -0.32, R) >droVir3.scaffold_13042 4967717 115 + 5191987 CGACAGCUCUAGCAAAAUAGUCGCAGAUGCUGUUGCUGUAAGUUUUCGCCGAGUCAAAAAACAAAACAACCGAAGCCCAUCGACCACCAACACACCCUCUCCACCCCACCCCCAU ((((((((((.((.........))))).))))))).(((..(((((...........)))))........(((......))).......)))....................... ( -14.30, z-score = -0.42, R) >droGri2.scaffold_15081 3629148 113 + 4274704 CGACAGCGCUAGCAAAAUAGUCGCAGAUGCUGUUGCUGUAAGUUU-CACGGAGUCAAAAAACAAAACUGCCGAAAAACCAAACGCACCACCACCUCCACCUCUCCCU-CCGCCAU .(((((((((.((.........)))).)))))))((.((..((((-..((((((...........))).)))..))))...))))......................-....... ( -18.00, z-score = 0.05, R) >consensus ______CGGCAGCAAAAUAGUCGCAGAUGCUGUUGCUGUAAGUUU_CACGCAGCCAAAAAA__AAACUGCCGAAACCCAUCCAUCCGC_CCACAGCAGCCCCUCCCC_C______ ........(((((((....(((...)))....)))))))............................................................................ ( -9.20 = -8.94 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:26 2011