| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,473,891 – 1,473,941 |
| Length | 50 |
| Max. P | 0.979015 |
| Location | 1,473,891 – 1,473,941 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.30000 |
| Mean single sequence MFE | -7.70 |
| Consensus MFE | -7.70 |
| Energy contribution | -7.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.20 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.979015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1473891 50 + 22422827 UGCCUCGUAUGUAAGUACGAAAUUCUAAAAAAGGCGAACAAAAAAUAAAA .(((((((((....))))))............)))............... ( -7.70, z-score = -2.20, R) >droSec1.super_10 1294371 50 + 3036183 UGCCUCGUAUGUAAGUACGAAAUUCUAAAAAAGGCGAACAAAAAAUAAAA .(((((((((....))))))............)))............... ( -7.70, z-score = -2.20, R) >droSim1.chrX 1092583 50 + 17042790 UGCCUCGUAUGUAAGUACGAAAUUCUAAAAAAGGCGAACAAAAAAUAAAA .(((((((((....))))))............)))............... ( -7.70, z-score = -2.20, R) >consensus UGCCUCGUAUGUAAGUACGAAAUUCUAAAAAAGGCGAACAAAAAAUAAAA .(((((((((....))))))............)))............... ( -7.70 = -7.70 + 0.00)
| Location | 1,473,891 – 1,473,941 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.30000 |
| Mean single sequence MFE | -6.40 |
| Consensus MFE | -6.40 |
| Energy contribution | -6.40 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.918258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1473891 50 - 22422827 UUUUAUUUUUUGUUCGCCUUUUUUAGAAUUUCGUACUUACAUACGAGGCA ...............((((((....)))..(((((......)))))))). ( -6.40, z-score = -1.63, R) >droSec1.super_10 1294371 50 - 3036183 UUUUAUUUUUUGUUCGCCUUUUUUAGAAUUUCGUACUUACAUACGAGGCA ...............((((((....)))..(((((......)))))))). ( -6.40, z-score = -1.63, R) >droSim1.chrX 1092583 50 - 17042790 UUUUAUUUUUUGUUCGCCUUUUUUAGAAUUUCGUACUUACAUACGAGGCA ...............((((((....)))..(((((......)))))))). ( -6.40, z-score = -1.63, R) >consensus UUUUAUUUUUUGUUCGCCUUUUUUAGAAUUUCGUACUUACAUACGAGGCA ...............((((((....)))..(((((......)))))))). ( -6.40 = -6.40 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:26 2011