| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,627,067 – 9,627,135 |
| Length | 68 |
| Max. P | 0.841984 |
| Location | 9,627,067 – 9,627,135 |
|---|---|
| Length | 68 |
| Sequences | 5 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 67.86 |
| Shannon entropy | 0.55107 |
| G+C content | 0.47755 |
| Mean single sequence MFE | -18.60 |
| Consensus MFE | -10.54 |
| Energy contribution | -11.54 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.841984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9627067 68 + 23011544 AGACCAUUGAAAACGUUGGGCAGGAUGUGCCCUAACAUGCACAGGGUAUAUCUGACUGAAAUCCGCAA------------- ......(((......(..(...(((((((((((.........)))))))))))..)..)......)))------------- ( -18.40, z-score = -1.15, R) >droAna3.scaffold_12943 1052073 75 + 5039921 AAGCCAUUGAAAAGAUUCCAGUGUAUAAGCACUUUUCCGUUCUGGGUGUAUUGGAC--AAGUGGCCGGUUUCGCAGA---- ..((((((........((((((((((.((.((......)).))..)))))))))).--.))))))............---- ( -15.20, z-score = 0.68, R) >droYak2.chr2L 12312121 79 + 22324452 AGACCAUGGAAAACGUUGG-CAGGAUAUACCCUAAGCUGCACAGGGUAUACCCGACUGAAAUCC-CACUUUAUCGCGAGCA ..............(((.(-(.((.((((((((.........)))))))).))((.((((....-...)))))))).))). ( -19.00, z-score = -0.87, R) >droSec1.super_3 5073533 67 + 7220098 AGACCAUUGAAAACGUUGG-CCGGAUGUGCCCUAACUUGCACAGGGUAUAUCUGACUGAAAUCCGCAA------------- ......(((......(..(-.((((((((((((.........)))))))))))).)..)......)))------------- ( -20.20, z-score = -2.38, R) >droSim1.chr2L 9399806 67 + 22036055 AGACCAUUGAAAACGUUGG-CCGGAUGUGCCCUAACUUGCGCAGGGUAUAUCUGACUGAAAUCCGCAA------------- ......(((......(..(-.((((((((((((.........)))))))))))).)..)......)))------------- ( -20.20, z-score = -2.04, R) >consensus AGACCAUUGAAAACGUUGG_CAGGAUGUGCCCUAACCUGCACAGGGUAUAUCUGACUGAAAUCCGCAA_____________ .....................((((((((((((.........))))))))))))........................... (-10.54 = -11.54 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:39 2011