| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,469,031 – 1,469,132 |
| Length | 101 |
| Max. P | 0.761928 |
| Location | 1,469,031 – 1,469,132 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 82.29 |
| Shannon entropy | 0.32870 |
| G+C content | 0.55734 |
| Mean single sequence MFE | -38.18 |
| Consensus MFE | -28.67 |
| Energy contribution | -30.15 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1469031 101 - 22422827 GCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCUGAGGCUGAGACUGAGGCUGAGGCUUCAGAAUUUGGCGCUGAUGUCCUC-- ...................((.(((((((((...(((.(((((......))))).))).....(((((((....))))))).....))))))))).))...-- ( -39.00, z-score = -1.25, R) >droSim1.chrX 16578614 101 + 17042790 GCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCUGAGGCUGAGACUGAGGCUGAGGCUUCAGAAUUUGGCGCUGAUGUCCUC-- ...................((.(((((((((...(((.(((((......))))).))).....(((((((....))))))).....))))))))).))...-- ( -39.00, z-score = -1.25, R) >droSec1.super_10 1289500 101 - 3036183 GCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCUGAGGCUGAGACUGAGGCUGAGGCUUCAGAAUUUGGCGCUGAUGUCCUC-- ...................((.(((((((((...(((.(((((......))))).))).....(((((((....))))))).....))))))))).))...-- ( -39.00, z-score = -1.25, R) >droYak2.chrX 1354332 101 - 21770863 GCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCUGAGGCUGAGACUGAGGCUUCAGCUUCAGAAUUUGGUGCUGAUGUCCUC-- ...................((.((((((..(.((((.((....)).)))).((((((((((..(....)..)))))))))).....)..)))))).))...-- ( -35.50, z-score = -0.74, R) >droEre2.scaffold_4644 1461217 95 - 2521924 GCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGG------CUGAGACUGAGGCUUCAGCUUCAGAAUUUGGCGCUGAUGUCCUC-- ...................((.(((((((((....((.(((((......))------))).))(((((((....))))))).....))))))))).))...-- ( -36.30, z-score = -1.83, R) >droVir3.scaffold_13042 4937606 87 - 5191987 GCCCAGAAACU---UUUUUGGGAUCAGCGUCGUCGGCUUCGACGU-------------UGACGUUGACGUCGCCGCGGCAGCAUUUGAUGCCGGCGUCGCGUC .(((((((...---.)))))))....(((.(((((((.(((((((-------------(......))))))((....)).......)).))))))).)))... ( -40.30, z-score = -2.70, R) >consensus GCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCUGAGGCUGAGACUGAGGCUGAGGCUUCAGAAUUUGGCGCUGAUGUCCUC__ ...................((.(((((((((...(((.(((((......))))).))).....(((((((....))))))).....))))))))).))..... (-28.67 = -30.15 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:24 2011