| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,453,618 – 1,453,732 |
| Length | 114 |
| Max. P | 0.535433 |
| Location | 1,453,618 – 1,453,732 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.46 |
| Shannon entropy | 0.18488 |
| G+C content | 0.48686 |
| Mean single sequence MFE | -38.20 |
| Consensus MFE | -27.40 |
| Energy contribution | -27.84 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535433 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1453618 114 + 22422827 UAAUCAAUGGGACGUAGUC-CCCAAGAUUGACUUUAGAAUGACUGGAGCCAGAGCUAUCAGCAGGUCAUCGGCUGUUGGACAAGCUCGACAUUAAUCGAGAUCUCUUU-----GGAAUUC (((((...(((((...)))-))...))))).((((((.....))))))((((((...(((((((........))))))).....(((((......)))))....))))-----))..... ( -31.80, z-score = -0.83, R) >droEre2.scaffold_4644 1446040 115 + 2521924 UUAUCAAUCGGGCGCAGGCCCCCAAGAUUGGCUUUAGAUUCAUUGGAGUCCGAGCAAUCAGCAGGUCAUCGGCUGUUGGAUAAGCUCGACAUUAGUCUGGAACUCUUU-----CGAAUUC ...((((((((((....))))....)))))).....(((((...(((((((((((..(((((((........)))))))....))))(((....))).)).)))))..-----.))))). ( -37.00, z-score = -1.72, R) >droYak2.chrX 1340473 120 + 21770863 UAAUCAAUCGGGCGCAGGCACCCAAGAUUGGCUCUAGAAUGACUGGAGCCAGUGCAAUCAGCAGGUCAUCGGCUGUUGGACAAGCUCGACAUUAGUCCAGAACUCUUUCAUCCAGAAUUC .......((((((((.((...))...(((((((((((.....)))))))))))))..(((((((........)))))))....))))))..........(((.(((.......))).))) ( -35.80, z-score = -1.12, R) >droSec1.super_10 1275806 114 + 3036183 UAAUCAAUGGGGCGCAGGC-CCCAAGAUUGGCUUUAGAAUGACUGAAGCCAGAGCUAUCAGCAGGUCAUCGGCUGUUGGACAAGCUCGACAUUAGUCGAGAUCUCUUU-----GGAAUUC ...((((((((((....))-))))(((((((((((((.....)))))))).(((((.(((((((........)))))))...)))))(((....)))..)))))..))-----))..... ( -43.40, z-score = -3.22, R) >droSim1.chrX 1072807 114 + 17042790 UAAUCAAUGGGGCGCAGGC-CCCAAGAUUGGCUUUAGAAUGACUGGAGCCAGAGCUAUCAGCAGGUCAUCGGCUGUUGGACAAGCUCGACAUUAGUCGAGAUCUCUUU-----GGAAUUC ...((((((((((....))-))))(((((((((((((.....)))))))).(((((.(((((((........)))))))...)))))(((....)))..)))))..))-----))..... ( -43.00, z-score = -2.90, R) >consensus UAAUCAAUGGGGCGCAGGC_CCCAAGAUUGGCUUUAGAAUGACUGGAGCCAGAGCUAUCAGCAGGUCAUCGGCUGUUGGACAAGCUCGACAUUAGUCGAGAUCUCUUU_____GGAAUUC ...((....(((.(....).)))((((((((((((((.....)))))))))).....(((((((........))))))).....((((((....))))))...)))).......)).... (-27.40 = -27.84 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:22 2011