| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,451,770 – 1,451,888 |
| Length | 118 |
| Max. P | 0.525531 |
| Location | 1,451,770 – 1,451,888 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 77.61 |
| Shannon entropy | 0.37817 |
| G+C content | 0.36212 |
| Mean single sequence MFE | -25.15 |
| Consensus MFE | -14.62 |
| Energy contribution | -16.58 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1451770 118 + 22422827 UUGAUGCCAAUGUAGUUGCGUGAGCAGCGAUUAUUCUACGAUUGGAAAUAUACAAUAGAAACAUGUGUUAAAAAGCUUAAUGAUUAAAACUAACUACAAAUUACUGGUUAAGCAAGAA (((((((..((((.(((((....))))).....(((((...(((........)))))))))))))))))))...(((((((.(.(((.............))).).)))))))..... ( -24.42, z-score = -1.76, R) >droSim1.chrX 1070947 113 + 17042790 UUGAUGCCAAUGUAGUUGCGCGAGCAGCGAUUAUUCUACGAUUGGAAAUAUA-----GAAACAGGUGUUAAAAAGCUUAAUAAUUAGAGCUAACUACAAAUUACUGGUUAGGCAAGAA ....((((..(((((((((....))))).....(((((....))))).))))-----....(((.(((.....(((((........)))))....))).....)))....)))).... ( -26.20, z-score = -1.60, R) >droSec1.super_10 1273950 113 + 3036183 UUGAUGCCAAUGUAGUUGCGCGAGCAGCGAUUAUUCUACGAUUGGAAAUAUA-----GAAACAGGUGUUAAAAAGCUUAAUAAUUAGAGCUAACUACAAAUUACUGGUUAGGCAAGAA ....((((..(((((((((....))))).....(((((....))))).))))-----....(((.(((.....(((((........)))))....))).....)))....)))).... ( -26.20, z-score = -1.60, R) >droYak2.chrX 1338613 102 + 21770863 UUGAUGCCAAUGUAGUUGCGUGAGCAGCGAUUGUUCUACAAUUGGAAAUAAA-----GAAAC-----------AGCUCACUGGUUAAAACCAACUUCAAACUAGUGGUUGUGCAAGGA ......(((((((((((((....)))))((....))))).))))).......-----...((-----------(((.((((((((.............)))))))))))))....... ( -29.52, z-score = -2.17, R) >droEre2.scaffold_4644 1444260 93 + 2521924 UUGAUGCCAAUGUAGUUGCGUGAGCAGCGAUUACUCUACAAUUAAAAAUAAC-----GAAUC------------------CGAUUAAAACUGAAAGCUGACU--UGGUUAGGCAAGGA ....((((..(((((((((....)))))((....))))))............-----.....------------------.......(((..(........)--..))).)))).... ( -19.40, z-score = -0.85, R) >consensus UUGAUGCCAAUGUAGUUGCGUGAGCAGCGAUUAUUCUACGAUUGGAAAUAUA_____GAAACA_GUGUUAAAAAGCUUAAUGAUUAAAACUAACUACAAAUUACUGGUUAGGCAAGAA ....((((..(((((((((....)))))((....))))))..................................................((((((........)))))))))).... (-14.62 = -16.58 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:21 2011