Locus 12654

Sequence ID dm3.chrX
Location 1,431,971 – 1,432,090
Length 119
Max. P 0.563112
window17396

overview

Window 6

Location 1,431,971 – 1,432,090
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 92.72
Shannon entropy 0.10032
G+C content 0.43417
Mean single sequence MFE -32.90
Consensus MFE -27.05
Energy contribution -27.83
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -1.84
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.14
SVM RNA-class probability 0.563112
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1431971 119 - 22422827
GAAGCUGCGCCAAGGAAACAUGCCCAUCAUUAGGUAUUGGGAUUAGAUAUUAGCUUUAAGCAUUGAGUCUUUCAAAUCCCAGUCCCUUGACUGGUUAAAUACGUAUUUGCCACACUUCA
((((.((.(.((((....)..(((..(((..(((.(((((((((.((.....((((........))))...)).))))))))).))))))..)))...........))).).)))))). ( -30.50, z-score =  -1.73, R)
>droSim1.chrX 1059753 119 - 17042790
GAAGCUGCGCCCAGGAAACAUGGCCAGCAUUAGGUAUUGGGAUUAGAUAUUAGCUUUAAGUAUAGAGUCUUUCAAAUCCCCCGCCCUUGACUGGUUAAAUACGUAUUUGCCACACUUCA
((((.((.((...(....).(((((((((...(((...((((((.((.....((((((....))))))...)).))))))..)))..)).)))))))...........))))..)))). ( -32.10, z-score =  -1.50, R)
>droSec1.super_10 1253371 119 - 3036183
GAAGCUGUGCCAAGGAAACAUGGCCAGCAUUAGGUAUUGGGAUUAGAUAUCAGCUUUAAGCAUUGAGACUUUCGAGUCCCCCGCCCUUGACUGGUUAAAUACGUAUUUGCCACACUUCA
((((.((((.((((....).(((((((((...(((...((((((.((..(((((.....))..))).....)).))))))..)))..)).))))))).........))).)))))))). ( -36.10, z-score =  -2.29, R)
>consensus
GAAGCUGCGCCAAGGAAACAUGGCCAGCAUUAGGUAUUGGGAUUAGAUAUUAGCUUUAAGCAUUGAGUCUUUCAAAUCCCCCGCCCUUGACUGGUUAAAUACGUAUUUGCCACACUUCA
(((((((.((((.(....).))))))))....((((..((((((.((....(((((........))).)).)).))))))....((......)).............))))....))). (-27.05 = -27.83 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:18 2011