Locus 12650

Sequence ID dm3.chrX
Location 1,411,316 – 1,411,436
Length 120
Max. P 0.764205
window17390

overview

Window 0

Location 1,411,316 – 1,411,436
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.54
Shannon entropy 0.40537
G+C content 0.49817
Mean single sequence MFE -35.62
Consensus MFE -22.00
Energy contribution -21.56
Covariance contribution -0.44
Combinations/Pair 1.30
Mean z-score -1.58
Structure conservation index 0.62
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.62
SVM RNA-class probability 0.764205
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1411316 120 - 22422827
GAAGUGUCCUUGCUGAAGUUUGGUACAUUGCUUCGCACUUCCGAAGCUUUGUUCCUUUAAAGCUUAUAUUAUCGGGCUUCGGGUUGUGCGUCCUUGAUAAUCCCGGGAGUAUGGCUCACC
(((((.(........((((((((.(((..((((((......))))))..))).))....))))))........).)))))((((..(((.((((.(......).)))))))..))))... ( -37.69, z-score =  -2.18, R)
>droSim1.chrX_random 1004290 107 - 5698898
--AGUGUCCUUGCUGAAGUUUGGUUCGUUGCUUCGCACUUCCCAAGCUUUGUUC-----------AUUUUAGCGAGCUUUGGGUUGUGCGUCCUUGAUAAUCCCGGGAGUAUGGCUCACC
--.(((.((.(((.(((((..........)))))((((..(((((((((.(((.-----------.....))))))).)))))..)))).((((.(......).))))))).))..))). ( -32.40, z-score =  -1.54, R)
>droSec1.super_10 1238219 107 - 3036183
--AGUGUCCUUGCUGAAGUUUGGUUCGUUGCUUCGCACUUCCCAAGCUUUGUUC-----------AUUUUAGCGAGCUUUGGGUUGUGCGUCCUUGAUAAUCCCGGGAGUAUGGCUCACC
--.(((.((.(((.(((((..........)))))((((..(((((((((.(((.-----------.....))))))).)))))..)))).((((.(......).))))))).))..))). ( -32.40, z-score =  -1.54, R)
>droYak2.chrX 1306932 119 - 21770863
-CGGUGUCCUUGCUGAAGUUUGGAACAUUGCUCUGCGUUUUCCAAGCUGCUUUCCUGCCAAGCUUACAUUGCUGGGCUUUGGGUUGUGCGUCCUUGAUAGCCCGAGGAGUUCGGCUUACC
-.((((.....((((((((((((((...(((...)))..)))))))))...((((((((.(((.......))).)))..((((((((.((....))))))))))))))).))))).)))) ( -42.70, z-score =  -1.82, R)
>droEre2.scaffold_4644 1400409 119 - 2521924
AAAGUGUCCUUGCUGAAGUUCGGUAAAUGGUUCCGCGCUUUCCAAGCUCCUUGCCUCUCAAGCUUACAUAACUGGGCCUUGGGUCGUGCGUCCUUGAUA-UUCGAGAUGUAUGGCUUACC
.(((.((((((((((.....))))))..(((...(.(((.....))).)...)))..................)))))))((((((((((((.(((...-..)))))))))))))))... ( -32.90, z-score =  -0.82, R)
>consensus
__AGUGUCCUUGCUGAAGUUUGGUACAUUGCUUCGCACUUCCCAAGCUUUGUUCCU___AAGCUUAUAUUACCGGGCUUUGGGUUGUGCGUCCUUGAUAAUCCCGGGAGUAUGGCUCACC
...(((.((.(((....................(((((..(((((((((........................)))).)))))..)))))((((.(......).))))))).))..))). (-22.00 = -21.56 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:13 2011