| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,403,171 – 1,403,285 |
| Length | 114 |
| Max. P | 0.839055 |
| Location | 1,403,171 – 1,403,285 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 72.63 |
| Shannon entropy | 0.44182 |
| G+C content | 0.55519 |
| Mean single sequence MFE | -41.30 |
| Consensus MFE | -23.69 |
| Energy contribution | -27.75 |
| Covariance contribution | 4.06 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839055 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 1403171 114 - 22422827 UUUUGGAUGG-GCAGGGGCGGCGGGUAGAAGGAAUGCCGCAAAGCGUUUACCCGCCGCUUUGGCUUCUGGCGAGCGGAAGCAGGAUGAAAUCCAAGCCGAAACCGAGAGGCCGAA .(((((..((-((..((((((((((((((.((....))((...)).))))))))))))))..)))).((((..((....)).((((...))))..))))...((....))))))) ( -50.70, z-score = -2.52, R) >droEre2.scaffold_4644 1392513 113 - 2521924 UUUUGGAU-G-GCAGGGGCGGCGGGAACAGGGAAUGCCACAAAGCGUUUACCCGCCGCUUUGGUUUCUGGCGAGCGGAAGCAGCAUGAAAUCUAAGACGAAACCGAGAGGCCGAA .......(-(-((...(((((((((......((((((......)))))).)))))))))((((((((..((..((....)).))..(....)......))))))))...)))).. ( -43.70, z-score = -2.24, R) >droSec1.super_10 1230402 114 - 3036183 UUUUGGAUGG-GCAGCGGCGGCGGGAAGAGGGAAUGCCGCAAAGCGUUUACCCGCCGCUUUGGCUUCUGGCGAGCGGAAGCAGGAUGAAAUCCAAGCCGAAACCGAGAGGCCGAA .........(-((..((((((((((......((((((......)))))).)))))))))((((.(((.(((..((....)).((((...))))..)))))).)))))..)))... ( -48.30, z-score = -1.55, R) >droAna3.scaffold_13117 2581107 95 + 5790199 ----GGAUAACAUGGAAACUAUGGAAACAAGAAAAGCCGCAAAGCGUCUUC------------UUUUUG----GCGCAGAUGGCCUGAAAUUCAAGCCGAAAGCUGAAAACCGGA ----((.......((......((....)).......))((...(((((...------------.....)----))))...((((.((.....)).))))...))......))... ( -22.52, z-score = -0.48, R) >consensus UUUUGGAUGG_GCAGGGGCGGCGGGAACAAGGAAUGCCGCAAAGCGUUUACCCGCCGCUUUGGCUUCUGGCGAGCGGAAGCAGCAUGAAAUCCAAGCCGAAACCGAGAGGCCGAA .(((((((......(((((((((((......((((((......)))))).))))))))))).(((((((.....)))))))........))))))).((...((....)).)).. (-23.69 = -27.75 + 4.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:12 2011