| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,402,725 – 1,402,826 |
| Length | 101 |
| Max. P | 0.742181 |
| Location | 1,402,725 – 1,402,826 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.83 |
| Shannon entropy | 0.26962 |
| G+C content | 0.49135 |
| Mean single sequence MFE | -30.73 |
| Consensus MFE | -25.32 |
| Energy contribution | -24.67 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.742181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1402725 101 - 22422827 CAGCAUUCAAUUGGCAAAUGGCUACACCGUGCGUAAGAAGCGAAAGCCAGAGAAAGCUAAGGCAGCCUGAGCCUUAGCCACAGCACCAGAGUCUGAAUCAG------------ (((.((((...((((.....))))....((((.......((....))........((((((((.......))))))))....))))..)))))))......------------ ( -31.30, z-score = -2.11, R) >droSec1.super_10 1229947 110 - 3036183 CAGAAUUCAAUUGGCAAGUGGCUACCUCGUGCGUAAGAAGCGAAAGCCAGAGAAAGCUAAGGCA---UGAGCCUUAGCCACAGUACCAGAGUCUGAAUCAGAAACUGAAUCAA ((((.(((...(((...(((((((.(((((((.(.((..((....)).........)).).)))---))))...)))))))....))))))))))..((((...))))..... ( -32.50, z-score = -2.54, R) >droEre2.scaffold_4644 1392036 113 - 2521924 UAACAUUCAAUUGGCAAGUGGUGACGCCGUGCGUAAGAAGCCAAAGCUAGAGAAAGCCAAGGCAGCCUGGGCCUUAGCCACAGCAUCAGAGUUUGAAUCGGAAUCUGAAUCAG .............(((.(((....)))..))).......(((...(((......)))...))).((.(((((....))).)))).(((((.((((...)))).)))))..... ( -28.40, z-score = 0.29, R) >consensus CAGCAUUCAAUUGGCAAGUGGCUACACCGUGCGUAAGAAGCGAAAGCCAGAGAAAGCUAAGGCAGCCUGAGCCUUAGCCACAGCACCAGAGUCUGAAUCAGAA_CUGAAUCA_ (((.((((...((((.....))))....((((.......((....))........((((((((.......))))))))....))))..))))))).................. (-25.32 = -24.67 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:11 2011