| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,400,419 – 1,400,529 |
| Length | 110 |
| Max. P | 0.858714 |
| Location | 1,400,419 – 1,400,529 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 83.03 |
| Shannon entropy | 0.23375 |
| G+C content | 0.48049 |
| Mean single sequence MFE | -22.83 |
| Consensus MFE | -20.73 |
| Energy contribution | -21.07 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.858714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1400419 110 - 22422827 AACAACCACCGCCCCAUCCCAUUCCAUCCCAUCCGCCACCCAAUCGCGCGGGCAAGUUUGAGAUUUUUAUUAUUAUGAAAUUUUCGCUAAUUCGAGGCGGAAGGCCAAGC ............................((.((((((.(((........)))..(((..((((.((((((....)))))).))))))).......)))))).))...... ( -23.70, z-score = -0.46, R) >droSim1.chrX_random 995430 110 - 5698898 AACAACCACCGCCCCAUCCCAUUCCAUCCCAUCCGCCACCCAAUCGCGCGAGCAAGUUUGAGAUUUUUAUUAUUAUGAAAUUUUCGCUAAUUCGAGGCGGAAGGCCAAGC ............................((.((((((........((....)).(((..((((.((((((....)))))).))))))).......)))))).))...... ( -24.80, z-score = -2.12, R) >droYak2.chrX_random 180965 91 - 1802292 -----------------AUCAACCA--CCCAUCCGCCAUCCAAUCGCGCCACCAAGUUUGAGAUUUUUAUUAUUAUGAAAUUUUCGCUAAUUCGAGGCGGAAGGCCAAGC -----------------........--.((.((((((.((.(((.((((......))..((((.((((((....)))))).))))))..))).)))))))).))...... ( -20.00, z-score = -1.63, R) >consensus AACAACCACCGCCCCAUCCCAUUCCAUCCCAUCCGCCACCCAAUCGCGCGAGCAAGUUUGAGAUUUUUAUUAUUAUGAAAUUUUCGCUAAUUCGAGGCGGAAGGCCAAGC ............................((.((((((........((....)).(((..((((.((((((....)))))).))))))).......)))))).))...... (-20.73 = -21.07 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:10 2011