| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,395,148 – 1,395,244 |
| Length | 96 |
| Max. P | 0.828430 |
| Location | 1,395,148 – 1,395,244 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 59.83 |
| Shannon entropy | 0.72870 |
| G+C content | 0.47511 |
| Mean single sequence MFE | -27.36 |
| Consensus MFE | -7.78 |
| Energy contribution | -10.38 |
| Covariance contribution | 2.60 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1395148 96 - 22422827 GCCAGAAGCAUAUUCGCGGUGAGUUACGUUUUUCUGCUCUGGUUGAGUGACAACUCGUUUUUCAGGUGCCAUUGUGCAUGUGGCACAUUUAAGCAG ((((((.(((.....(((........))).....))))))))).((((....))))((((.....(((((((.......)))))))....)))).. ( -31.40, z-score = -2.01, R) >droEre2.scaffold_4644 1384469 86 - 2521924 ------CCCAAGGGCAUGGUGAGUUUCGUUUCUCUGCUGUGGUUGAGUGACAAUUCG----UCAGGUGCCACUGUGCAAGUGGUACAUUUAAGCCG ------......(((.((..(((((..(((.(((.((....)).))).)))))))).----.)).((((((((.....))))))))......))). ( -30.20, z-score = -2.13, R) >droYak2.chrX 1300951 83 - 21770863 ------GGCAAGAGCAUGGUGAGUU-------ACUGCUCUGGUUGAGUGACAACUCGUUUUUCAGGUGCCAUUCUGCAAGUGGCACAUUUAAGCCG ------(((.((((((.(.......-------.)))))))....((((....)))).........((((((((.....))))))))......))). ( -28.60, z-score = -1.74, R) >droSec1.super_10 1222492 90 - 3036183 GCCAGAAGCAUAUUCGCGGUGAGUUACGUUUUUCUGCUCUGGUUGAAUGACAACUCGUUUUUCAGGUGCGAUUGUGCUAGUGGCACAUUU------ ((((..((((((.(((((.((((((..(((.(((.((....)).))).))))))))(.....).).))))).))))))..))))......------ ( -29.70, z-score = -2.25, R) >dp4.chrXL_group1a 4534936 92 + 9151740 ----GUUCCCACUAUGUGAGCAGAGCAGGACCUCCGCUCUUUGCGAUUCAUUUAAUUUUACCCAAUUUCCCGUUUAAAAGCGUUCCGUUCGAACAA ----((((.....(((.(((((((((.((....)))))))...............(((((..(........)..)))))..)))))))..)))).. ( -16.90, z-score = -1.31, R) >consensus ____G_AGCAAAUGCGUGGUGAGUUACGUUUCUCUGCUCUGGUUGAGUGACAACUCGUUUUUCAGGUGCCAUUGUGCAAGUGGCACAUUUAAGCAG ...................((((((..(((.(((.((....)).))).)))))))))........((((((((.....)))))))).......... ( -7.78 = -10.38 + 2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:10 2011