| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,393,558 – 1,393,665 |
| Length | 107 |
| Max. P | 0.806995 |
| Location | 1,393,558 – 1,393,665 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.33 |
| Shannon entropy | 0.26634 |
| G+C content | 0.46330 |
| Mean single sequence MFE | -23.30 |
| Consensus MFE | -16.95 |
| Energy contribution | -17.45 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1393558 107 - 22422827 CCACUUUUUCAGGCAGACAGGUUAACCCUUUUUCGGUUUGCCACCCACUGCACACACACAAGUACUUUACGUACAUAUGUACGUUUAAUUUGUCAUCCUCCUAUUUC------------- ............((((...(((.((((.......)))).))).....))))......((((((.....((((((....))))))...))))))..............------------- ( -21.10, z-score = -2.80, R) >droSec1.super_10 1220829 107 - 3036183 CCACAUUUUCAGGCAGACAGGUUAACCCUUUUUCGGUUUGCCACCCACUGCACACACACAAGUACUUUAUGUACAUAUGUACGUGUAAUCUGUCCUCCUCCUACCCC------------- ...........((((((..(((.((((.......)))).)))......(((((..(((...((((.....))))...)))..))))).)))))).............------------- ( -24.20, z-score = -2.65, R) >droYak2.chrX 1299165 118 - 21770863 CCUCAUUUUCAUGCAGACAGGUUAACCCUUUUUCGGUUUGCCACCCACUG--GGCACACAAGUACUUUGUGUACAUAUGCACGUGUAAUCUGCUAUCCUCUUGCCCCGCUGCCUCUGCCU ............(((((..(((.((((.......)))).))).......(--((((((((((...))))))(((((......)))))..............))))).......))))).. ( -27.40, z-score = -0.95, R) >droEre2.scaffold_4644 1382801 101 - 2521924 CCACAUUUUCAUGCAGACAGGUUAACCCUUUUUCGGUUUGCCACCCACUG--CACACACAAGUGCUUUGUGUAC----GUACGUGUAAUCUGUUAUCCUCUUACCCC------------- ............(((((..(((.((((.......)))).)))...(((((--(..(((((((...)))))))..----))).)))...)))))..............------------- ( -20.50, z-score = -1.26, R) >consensus CCACAUUUUCAGGCAGACAGGUUAACCCUUUUUCGGUUUGCCACCCACUG__CACACACAAGUACUUUAUGUACAUAUGUACGUGUAAUCUGUCAUCCUCCUACCCC_____________ ...........((((((..(((.((((.......)))).)))...........(((((((.((((.....))))...)))..))))..)))))).......................... (-16.95 = -17.45 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:09 2011