| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,380,330 – 1,380,425 |
| Length | 95 |
| Max. P | 0.699144 |
| Location | 1,380,330 – 1,380,425 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 99.31 |
| Shannon entropy | 0.00957 |
| G+C content | 0.46689 |
| Mean single sequence MFE | -19.30 |
| Consensus MFE | -19.30 |
| Energy contribution | -19.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.07 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.699144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1380330 95 - 22422827 GAAAGUUAGGGACGAGAUAGCGAAAGAGAAAUUGAACCCAAAGCGCCUCACGAAAACCGCACACA-ACUCGAUAGUCAGUAGUAGAUAGUCGAGGA ........(((.(((.....(....).....)))..)))...(((............))).....-.((((((.(((.......))).)))))).. ( -19.30, z-score = -1.14, R) >droSec1.super_10 1207884 96 - 3036183 GAAAGUUAGGGACGAGAUAGCGAAAGAGAAAUUGAACCCAAAGCGCCUCACGAAAACCGCACACACACUCGAUAGUCAGUAGUAGAUAGUCGAGGA ........(((.(((.....(....).....)))..)))...(((............))).......((((((.(((.......))).)))))).. ( -19.30, z-score = -1.04, R) >droSim1.chrX 1042744 96 - 17042790 GAAAGUUAGGGACGAGAUAGCGAAAGAGAAAUUGAACCCAAAGCGCCUCACGAAAACCGCACACACACUCGAUAGUCAGUAGUAGAUAGUCGAGGA ........(((.(((.....(....).....)))..)))...(((............))).......((((((.(((.......))).)))))).. ( -19.30, z-score = -1.04, R) >consensus GAAAGUUAGGGACGAGAUAGCGAAAGAGAAAUUGAACCCAAAGCGCCUCACGAAAACCGCACACACACUCGAUAGUCAGUAGUAGAUAGUCGAGGA ........(((.(((.....(....).....)))..)))...(((............))).......((((((.(((.......))).)))))).. (-19.30 = -19.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:08 2011