| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,379,921 – 1,380,017 |
| Length | 96 |
| Max. P | 0.728964 |
| Location | 1,379,921 – 1,380,017 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 79.53 |
| Shannon entropy | 0.37511 |
| G+C content | 0.30158 |
| Mean single sequence MFE | -21.88 |
| Consensus MFE | -7.71 |
| Energy contribution | -8.63 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728964 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1379921 96 - 22422827 UUUG-UAUGUAAUCCG-UUUGAUUGU--UUGUGAUUGUUGUUUCAUUUGUUGUCUUUUUUUGGAUAGUCAAUAUUUACGAAUCAUAUUCAAGUAAGCGUA------ ....-.........((-((((.(((.--.((((((..((((.....(((((((((......)))))).))).....))))))))))..))).))))))..------ ( -20.80, z-score = -3.15, R) >droSim1.chrX 1042343 96 - 17042790 UUUG-UAUGUAAUCCG-UUUGAUUGU--UUGUGAUUGUUGUUUCAUUUGUUGUCUUUUUUUGGAUAGUCAAUAUUUACGAAUCAUAUUCAAGUAAGCGUA------ ....-.........((-((((.(((.--.((((((..((((.....(((((((((......)))))).))).....))))))))))..))).))))))..------ ( -20.80, z-score = -3.15, R) >droSec1.super_10 1207483 96 - 3036183 UUUG-UAUGUAAUCCG-UUUGAUUGU--UUGUGAUUGUUGUUUCAUUUGUUGUCUUUUUUUGGAUAGUCAAUAUUUACGAAUCAUAUUCAAGUAAGCGUA------ ....-.........((-((((.(((.--.((((((..((((.....(((((((((......)))))).))).....))))))))))..))).))))))..------ ( -20.80, z-score = -3.15, R) >droYak2.chrX 1284619 102 - 21770863 UUUG-UAUGUAAUCCG-UUUGAUUGU--UUGUGAUUGUUGUUUCAUUUGUUGUCUUUUUUUGGAUAGUAAAUAUUUACGAAUCAUAUUCAAGUAAGCGUACAUACA ..((-((((((...((-((((.(((.--.((((((..((((...(((((((((((......)))))))))))....))))))))))..))).)))))))))))))) ( -28.20, z-score = -4.78, R) >droEre2.scaffold_4644 1369092 96 - 2521924 UUUG-UAUGUAAUCCG-UUUGAUUGU--UUGUGAUUGCUGUUUCAUUUGUUGUCUUUUUUUGGAUAGUAAAUAUUUACGAAUCAUAUUCAAGUAAGCGUA------ ....-.........((-((((.(((.--.(((((((..(((...(((((((((((......)))))))))))....))))))))))..))).))))))..------ ( -20.40, z-score = -2.74, R) >droVir3.scaffold_13047 7698778 100 + 19223366 UUCGCUGUUCACUUCGCUUUUGCUGCUGUUGCAAUUAAUAGUUCACUUGUUGGCCUGUCACAUACGGAUCGUAUCCGCUGACAUUGAAAAUGUGAUUAAA------ .((((..((((....(((...((.(((((((....)))))))......)).))).(((((....(((((...))))).))))).))))...)))).....------ ( -20.30, z-score = -0.08, R) >consensus UUUG_UAUGUAAUCCG_UUUGAUUGU__UUGUGAUUGUUGUUUCAUUUGUUGUCUUUUUUUGGAUAGUCAAUAUUUACGAAUCAUAUUCAAGUAAGCGUA______ .................(((((.(((..((((((.(((((.........((((((......)))))).))))).))))))...))).))))).............. ( -7.71 = -8.63 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:07 2011