| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,378,857 – 1,378,953 |
| Length | 96 |
| Max. P | 0.506450 |
| Location | 1,378,857 – 1,378,953 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 67.48 |
| Shannon entropy | 0.61271 |
| G+C content | 0.44066 |
| Mean single sequence MFE | -25.54 |
| Consensus MFE | -6.47 |
| Energy contribution | -6.89 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.64 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1378857 96 - 22422827 --AUAUACACUAGACAAC---CAAACACGCGCGGCCGUUUAGCUG------UGCGUGUGCUU-CUUCGAGACUCUUUUCGUUAAAGUAACGCCAUAUCUGUUCGUUUA- --........((((((((---...(((((((((((......))))------)))))))((((-...(((((....)))))...))))............))).)))))- ( -27.00, z-score = -2.13, R) >droSim1.chrX 1041289 96 - 17042790 --AUAUACACUAGACAAC---CAAACACGCACGGCCGUUUAGCUG------UGCGUGUGCUU-CUUCGAGACUCUUUUCGUUAACGUAACGCCAUCUCUGUUUGUUUA- --........(((((((.---((.(((((((((((......))))------)))))))....-....((((.......(((((...)))))...)))))).)))))))- ( -28.20, z-score = -3.06, R) >droSec1.super_10 1206429 94 - 3036183 --AUAUACACUAGAC-AC---CAAACACGCACGG-CGCUUAGCUG------UGCGUGUGCUU-CUUCGAGACUCUUUUCGUUAACGUAACGGCAUCUCACUGUGGUGG- --............(-((---((.((((((((((-(.....))))------)))))))....-....((((..((.((((....)).)).))..))))....))))).- ( -33.80, z-score = -3.65, R) >droYak2.chrX 1283521 96 - 21770863 --AUAUACACUAGAAAAC---CAAACGCGCACGGCCGUUUAGCUG------UGCGUGUGCUU-CUUCAAGACUCUUUUCGUUAACGUAACGCCAUCUCUGUUCGUUUA- --.......((.(((...---...(((((((((((......))))------)))))))....-.))).))............((((.((((.......))))))))..- ( -23.90, z-score = -1.62, R) >droEre2.scaffold_4644 1368082 96 - 2521924 --AUAUACACUAGACAAC---CAAACACGCACGGCCGUUUAGCUG------UGCGUGUGCUU-CUUCGAGACUAUUUUCGUUAACGUAACGCCAUCUCUGUUCGUUUA- --........((((((((---...(((((((((((......))))------)))))))....-....((((.......(((((...)))))...)))).))).)))))- ( -26.00, z-score = -2.20, R) >droPer1.super_11 1620951 102 + 2846995 AUACAAAUAACAAAUAACGCGCGUAUAUGCAUGAAUAUACAUAUGCAUGUAUGCGUGUGCUU-CUUUGAGACUCCUU--GUU----UGAUGCCAUCUCUGUUCAAUUAU ........((((....(((((((((((((((((........)))))))))))))))))((.(-(..((((....)))--)..----.)).))......))))....... ( -27.60, z-score = -2.95, R) >droMoj3.scaffold_6540 20761884 75 + 34148556 ----------------------AUAUACGUUAGACUGCCAAA---------CACACGCGCUUGUUUUGCUAUUGCCU--GACAACAUGCCGCAAUCGAUAUUUGUUGC- ----------------------......(((((.(.((.(((---------((........))))).))....).))--))).....((.((((.......)))).))- ( -12.30, z-score = 0.70, R) >consensus __AUAUACACUAGACAAC___CAAACACGCACGGCCGUUUAGCUG______UGCGUGUGCUU_CUUCGAGACUCUUUUCGUUAACGUAACGCCAUCUCUGUUCGUUUA_ ........................(((((((((((......))))......)))))))................................................... ( -6.47 = -6.89 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:06 2011