| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,372,426 – 1,372,533 |
| Length | 107 |
| Max. P | 0.568575 |
| Location | 1,372,426 – 1,372,533 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 78.19 |
| Shannon entropy | 0.30426 |
| G+C content | 0.38941 |
| Mean single sequence MFE | -22.97 |
| Consensus MFE | -17.64 |
| Energy contribution | -18.43 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1372426 107 - 22422827 ACUUAACGAACGGUGCUUACACUGAGCCCUCGAAGGGGGGUCAUUUGCAAAUGGUUUAUUACAUUGGAUUAAACAAUAUAUUCUGAAAAAAUGUAGGAACAACUAAG ......(((((((((....))))).((((((....))))))..))))....(((((..((((((((((.((.......)).))).....)))))))....))))).. ( -21.90, z-score = -1.18, R) >droYak2.chrX 1277192 107 - 21770863 ACGCAACGGACUGUGCUUACAGUGGGCCCUCGAAAGAUGGCCAGAUGCAUAUCAUUUAUUACAUGAAGUGAAACAAGCUUUUAACGAAAAAUUCAACAACAACUAAC ..(((.(..(((((....))))).((((.((....)).)))).).)))...((((((........)))))).................................... ( -23.10, z-score = -1.72, R) >droEre2.scaffold_4644 1361819 107 - 2521924 ACGUAACGAACGUUGCUUACAGUGGGCCCUCGAAAGAGUGUCAGUUGCAUAUCAUUUAUUACAUUGAGUGAAACAAGCUUUUCAUGAAAAAUGCACGAACAACUAAC ..(((((....)))))........(((.(((....))).)))(((((....(((((((......))))))).....((((((.....)))).)).....)))))... ( -23.90, z-score = -0.98, R) >consensus ACGUAACGAACGGUGCUUACAGUGGGCCCUCGAAAGAGGGUCAGUUGCAUAUCAUUUAUUACAUUGAGUGAAACAAGCUUUUCACGAAAAAUGCAAGAACAACUAAC ..(((((...(((((....)))))(((((((....))))))).)))))...(((((((......))))))).................................... (-17.64 = -18.43 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:05 2011