Locus 12640

Sequence ID	dm3.chrX
Location	1,365,150 – 1,365,240
Length	90
Max. P	0.700470

overview

Window 0

Location	1,365,150 – 1,365,240
Length	90
Sequences	11
Columns	101
Reading direction	forward
Mean pairwise identity	66.21
Shannon entropy	0.73542
G+C content	0.48228
Mean single sequence MFE	-20.51
Consensus MFE	-10.16
Energy contribution	-9.96
Covariance contribution	-0.20
Combinations/Pair	1.62
Mean z-score	-0.44
Structure conservation index	0.50
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.45
SVM RNA-class probability	0.700470
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1365150 90 + 22422827
CAAUGCCCAAUUCCCUUUC-----------CAGAUGGCGUGGUCUUCGGCGCCAUAGUUACAUUCGCCAGCUUUUUCGUGCUGAUGAUGUCCUUUUGCUCG
....((.............-----------...(((((((.(....).)))))))....((((.((.((((........)))).))))))......))... ( -21.20, z-score =  -0.62, R)
>droGri2.scaffold_14853 320176 90 + 10151454
-----------GUGCGUGUGUGUCCACUUACAGAUGGAGUUGUUUUUGGUGCAAUUGUGACAUUCGCCAGCUUCUUUGUGCUGAUGAUGUCCUUUUGCUCG
-----------...(((.((((......)))).)))............(.((((..(.(((((.((.((((........)))).))))))))..)))).). ( -24.20, z-score =  -1.08, R)
>droMoj3.scaffold_6328 441684 86 - 4453435
---------------GUUUGUGUGUGCCUGCAGAUGGAGUCGUAUUUGGAGCAAUUGUCACCUUUGCCAGCUUCUUUGUAUUGAUGAUGUCCUUCUGCUCA
---------------..............(((((.((((((((((..(((((...((.((....)).)))))))...))).))))....))).)))))... ( -18.10, z-score =   0.48, R)
>droWil1.scaffold_181150 3682774 90 - 4952429
-------CAAU--CUAUCAUUCC-CAUUUC-AGAUGGCGUUGUCUUUGGUGCGAUAAUCACCUUUGCCAGUUUCUUCGUACUGAUGAUGUCCUUCUGUUCC
-------....--..........-.....(-(((.(((((..((...(((((((.....((........))....)))))))))..)))))..)))).... ( -19.80, z-score =  -2.06, R)
>droSim1.chrX_random 988721 90 + 5698898
CAAUGCCCAAUUCCCUUCC-----------CAGAUGGCGUGGUCUUCGGCGCCAUAGUUACAUUCGCCAGCUUUUUCGUGCUGAUGAUGACCUUCUGCUCG
...................-----------((((((((((.(....).))))))..((((...(((.((((........)))).)))))))..)))).... ( -22.00, z-score =  -0.65, R)
>droSec1.super_10 1192136 90 + 3036183
CAAUGCCCAAUUCCCUUCC-----------CAGAUGGCGUGGUCUUCGGCGCCAUAGUUACAUUCGCCAGCUUUUUCGUGCUGAUGAUGACCUUCUGCUCG
...................-----------((((((((((.(....).))))))..((((...(((.((((........)))).)))))))..)))).... ( -22.00, z-score =  -0.65, R)
>droYak2.chrX 1269862 101 + 21770863
CAAUGCCCAAUUCCCCUUCAAUUUCGUUUUCAGAUGGCGUAGUCUUCGGCGCCAUUGUCACAUUCGCCAGCUUCUUCGUGCUGAUGAUGUCCUUCUGCUCA
....((..........................((((((((........))))))))...((((.((.((((........)))).))))))......))... ( -20.60, z-score =  -0.55, R)
>droEre2.scaffold_4644 1354639 101 + 2521924
CCAUGCCCAAUGCACUUUCAAUACACUUUCCAGAUGGCGUGGUCUUCGGCGCCAUAGUCACAUUCGCCAGCUUCUUCGUGCUGAUGAUGUCCUUCUGCUCA
...(((.....)))................((((((((((.(....).)))))).....((((.((.((((........)))).))))))...)))).... ( -23.20, z-score =  -0.11, R)
>dp4.chrXL_group1a 4498834 93 - 9151740
-------CAAUGAUCAUCUUUAU-UAUCUCUAGAUGGCGUUGUCUUCGGGGCAAUACUCACCUUUGGCAGCUCCUUUGUGCUGAUGAUGUCCUUCUGUUCG
-------(((((.((((((....-.......))))))))))).....((((((.......((...))((((........))))....))))))........ ( -19.70, z-score =  -0.38, R)
>droPer1.super_11 1605236 93 - 2846995
-------CAAUGAUCAUCUUUAU-UAUCUCUAGAUGGCGUUGUCUUCGGGGCAAUACUCACCUUUGGCAGCUCCUUUGUGCUGAUGAUGUCCUUCUGUUCG
-------(((((.((((((....-.......))))))))))).....((((((.......((...))((((........))))....))))))........ ( -19.70, z-score =  -0.38, R)
>triCas2.ChLG5 11770401 89 + 18847211
---------AAUGACACACCUAC---UUUUUAGGUUAUCUGGUAAAUGGGGCCCUCCUUACGUACAUCGCCGGUUUAUUCCUAAUGAUCGCCUUCUGCAGG
---------.........(((.(---.....((((.(((..(((..(((((....)))))..)))......((......))....))).))))...).))) ( -15.10, z-score =   1.19, R)
>consensus
_______CAAUUCCCAUCC_U_U___UUUCCAGAUGGCGUGGUCUUCGGCGCCAUAGUCACAUUCGCCAGCUUCUUCGUGCUGAUGAUGUCCUUCUGCUCG
..............................((((.((....(((.(((((((.........................))))))).)))..)).)))).... (-10.16 =  -9.96 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:05 2011