| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,625,414 – 9,625,475 |
| Length | 61 |
| Max. P | 0.647029 |
| Location | 9,625,414 – 9,625,475 |
|---|---|
| Length | 61 |
| Sequences | 7 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 69.56 |
| Shannon entropy | 0.63154 |
| G+C content | 0.35111 |
| Mean single sequence MFE | -8.75 |
| Consensus MFE | -3.43 |
| Energy contribution | -4.66 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9625414 61 + 23011544 AAUUUAAAUUUAUGGUUUGUCCUUCCCGACUGAUGAUUUAGUAAAUUCAAACCAAUUACCG ............(((((((.........(((((....))))).....)))))))....... ( -10.44, z-score = -2.33, R) >droAna3.scaffold_12943 1050334 59 + 5039921 AAUAUAUAUAUUUGAUGUUUACCUUGCGAAUGAU--CUAGGCCAAAGUAAACCAAUUACCG ................((((((.(((.(..((..--.))..)))).))))))......... ( -5.00, z-score = 0.17, R) >droEre2.scaffold_4929 10232337 61 + 26641161 AACUUAAAUUUAUGGCUUGUCCUUCCCGACUGAUUAUUUAGUAAAUGUAAACCAAUUACCG ............(((.(((.(.......(((((....)))))....)))).)))....... ( -3.90, z-score = 0.41, R) >droYak2.chr2L 12310395 61 + 22324452 AACUUAAAUUUAUGGUUUGUCCCACUCGACAGAUGAUUUAGUAAAAGCAAACCAAUUACCG ............((((((((...(((.(((....).)).)))....))))))))....... ( -9.00, z-score = -1.49, R) >droSec1.super_3 5071902 61 + 7220098 AACUUAAAUUUAUGGUUUGUCCUUGCAGACUGAUGAUUUAGUAAAUGCAAACCAAUUACCG .............((((((...(((((.(((((....)))))...)))))..)))..))). ( -12.10, z-score = -2.50, R) >droSim1.chr2L 9398167 61 + 22036055 AACUUAAAUUUAUGGUUUGUCCUUGCCGACUGAUGAUUUAGUAAAUGCAAACCAAUUACCG ............((((((((..((((..(........)..))))..))))))))....... ( -12.20, z-score = -2.97, R) >droGri2.scaffold_15252 13652174 50 - 17193109 UAGCUAAAGCCAUUGUUUCAGUGUCCACACCCAUAA---GGCCAAAAGGCACG-------- ..(((...(((.((((....(((....)))..))))---))).....)))...-------- ( -8.60, z-score = -0.71, R) >consensus AACUUAAAUUUAUGGUUUGUCCUUCCCGACUGAUGAUUUAGUAAAUGCAAACCAAUUACCG ............((((((((........(((((....)))))....))))))))....... ( -3.43 = -4.66 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:37 2011