| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,360,877 – 1,360,985 |
| Length | 108 |
| Max. P | 0.582981 |
| Location | 1,360,877 – 1,360,985 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 63.36 |
| Shannon entropy | 0.66707 |
| G+C content | 0.53525 |
| Mean single sequence MFE | -18.99 |
| Consensus MFE | -8.06 |
| Energy contribution | -9.72 |
| Covariance contribution | 1.66 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1360877 108 + 22422827 AGUUAGACUAGCUAAUCCCAAGCUGAACCCAGGCCCCUUUCCCGCCGUCUGGACCCCUCUACCCCGUCCGGAACGCUCUACGAAAGCAAGUAACUAACUAACACACCA------- (((((((((.(((.......(((........(((.........))).(((((((...........)))))))..))).......))).)))..)))))).........------- ( -24.04, z-score = -1.99, R) >droSim1.chrX_random 983341 108 + 5698898 AGUUAGACUAGCUAAUCCCAAGCUGAGCCCAGGCCCCUUCCCCGCAGUCUGGACCCAUCUACCCCGUCUGGAACGCACUGCGAAAGCAAGUAACUAACUAACUCACCA------- ((((((..(((((.......))))).((....)).........((..((..(((...........)))..))..))(((((....)).)))..)))))).........------- ( -26.20, z-score = -1.61, R) >droSec1.super_10 1187859 104 + 3036183 AGUUAAACUAGCUAAUCCCAAGCUGAACCCAGGCCCCUUCCCCGCCGUCUGGACCCAUCUACCCCGUCUGGAACGCACUACGAAAGCAUGUAACUAACUCACCA----------- (((((.....(((.........(((....)))...........((..((..(((...........)))..))..))........)))...))))).........----------- ( -15.70, z-score = 0.45, R) >droYak2.chrX 1265749 102 + 21770863 GGUUAGACUAGCUACGUCCUAGCUAAUCCCAGGCCCCUUUCCCGC-AUCUGGACCC-----------CCUAAACGCUCCACAAAAGCAAGUAACUAACU-ACUCACCACUCACCA ((((((..((((((.....))))))...((((((.........))-..))))....-----------.......(((.......)))......))))))-............... ( -16.40, z-score = -0.93, R) >droEre2.scaffold_4644 1350529 103 + 2521924 GGUUAGACUAGCUAAGCCCUAGCUAAUCCCAGGCCCCUUUCCCGCUGCCUGGACCC-----------CCUAAACGCUCUACAAAAGCAAGUAACUAAAU-ACUCCCUACUCCCCA (((((((.((((((.....)))))).))((((((..(......)..))))))....-----------.......(((.......)))...)))))....-............... ( -21.20, z-score = -1.80, R) >droAna3.scaffold_13117 3819283 82 - 5790199 ---------AGUUAGACUAAGGCUAUUCCGGGCCCCCGUACACAUUUCCAAAAUCC-------CAACCCCCACCCCACCAAGUAAGUGAGAAGCCCCA----------------- ---------...........((((....(((....)))..................-------............(((.......)))...))))...----------------- ( -10.40, z-score = 0.08, R) >consensus AGUUAGACUAGCUAAUCCCAAGCUAAUCCCAGGCCCCUUUCCCGCCGUCUGGACCC_______CCGUCCGGAACGCACUACGAAAGCAAGUAACUAACU_ACUCACCA_______ ((((((..(((((.......)))))...((((((............)))))).........................................))))))................ ( -8.06 = -9.72 + 1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:04 2011