| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,355,375 – 1,355,491 |
| Length | 116 |
| Max. P | 0.862089 |
| Location | 1,355,375 – 1,355,491 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.67 |
| Shannon entropy | 0.46799 |
| G+C content | 0.60880 |
| Mean single sequence MFE | -44.30 |
| Consensus MFE | -25.96 |
| Energy contribution | -27.05 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1355375 116 - 22422827 CAUGUGGCGGUGAGAUGGAACCGUUGGCUCUCAAACAGGGUCUGGAGAAUAGGAGUAGGCGUACCGCUUCCCACGAAGAAGCUGUGGGCAGUGGUGAU---GCCGAGGAGCAGUACAUC .((((((((((........)))))..((((((......(.(((........))).).(((((((((((.((((((.......)))))).)))))).))---))))).))))..))))). ( -43.00, z-score = -2.02, R) >droSim1.chrX 1035003 116 - 17042790 CAUGUGGCGGUGAGACGGAACCGCUGGCCCUCAAACAGGGUGUGCAGAAGAGGAGUAGGCGUACCGCUGCCCAGGAGGAAGCUGUGGGCAGUGGUGAU---GCCGAGGAGCAGUAUAUC .....((((((........)))))).((((((..........(((.........)))((((((((((((((((.(.(....)).))))))))))).))---))))))).))........ ( -49.10, z-score = -3.11, R) >droSec1.super_10 1182048 116 - 3036183 CAUGUGGCGGUGAGACGGAACCGCUGGCCCUCAAACAGGGUCUGCAGAAGAGGAGUAGGCGUACCGCUGCCCAGGAGGAAGCUGUGGGCAGUGGUGAU---GCCGAGGAGCAGUACAUC .((((((((((........)))))).((((((........(((.....)))......((((((((((((((((.(.(....)).))))))))))).))---))))))).))...)))). ( -51.90, z-score = -3.21, R) >droYak2.chrX 1259869 116 - 21770863 CAAGUGGCGGUGCGACGGAGCCGCUGGCUCUGAAACAGGGCCUGGAGCAGCGGAGCAGACGAACGGCUGCCCGGGAGGACGCUGUGGGCCAUGGGGAU---CCCGAGGAGCAGUACAUC .....((((((........)))))).(((((....((.(((((...((((((..((((.(....).))))((....)).))))))))))).))((...---.))..)))))........ ( -47.00, z-score = -0.18, R) >droEre2.scaffold_4644 1341128 116 - 2521924 CUUGUGGCGGUGAGACGGAACCGCUGGCUCUAACACAGGGUCAGGAAAAGAGGAGCAGGCGAACGGCUGCCCAGGAGAAAGCUGUGGGCAGUAGGGAU---UCCGAGGAGCAGUACAUC ..((((.(.((....(((((((.((((((((.....))))))))...................(.((((((((.(.......).)))))))).))).)---))))....)).))))).. ( -36.90, z-score = -0.22, R) >droAna3.scaffold_13117 3814407 113 + 5790199 ACUGCGGUGGCGAUUCCUAUCCCCUGGAACUGAAGCAGGGGCUGCUGAAAAGAACCCGGCAGCGGGCCACC------GAAGCUAUAGAUCAUCCCGACCCGGUGGAGGAACAAUACAUA .((.(((((((..........(((((.........)))))(((((((.........)))))))..))))))------).)).....(.((.((((......).))).)).)........ ( -37.90, z-score = -0.48, R) >consensus CAUGUGGCGGUGAGACGGAACCGCUGGCUCUCAAACAGGGUCUGCAGAAGAGGAGCAGGCGUACCGCUGCCCAGGAGGAAGCUGUGGGCAGUGGUGAU___GCCGAGGAGCAGUACAUC .((((((((((........))))))((((((.....))))))................)))).((((((((((.(.......).))))))))))......................... (-25.96 = -27.05 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:03 2011