| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,326,659 – 1,326,711 |
| Length | 52 |
| Max. P | 0.749921 |
| Location | 1,326,659 – 1,326,711 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 94.81 |
| Shannon entropy | 0.07064 |
| G+C content | 0.42051 |
| Mean single sequence MFE | -14.60 |
| Consensus MFE | -11.20 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1326659 52 + 22422827 CAAUGUCAUAGCUCCAUUCCCGCAACAGAAUGUGGGGUUGAGGCAAAUAUGA .....(((((((..((..((((((......))))))..))..))...))))) ( -17.40, z-score = -2.50, R) >droSim1.chrX 1012466 50 + 17042790 CAAUGUCAUAGCUCCAUUCCCGCAAUAGAAUGUGG--UUGAGGCAAAUAUAA ...((((.((((..(((((........)))))..)--))).))))....... ( -13.20, z-score = -2.44, R) >droSec1.super_10 1149814 50 + 3036183 CAAUGUCAUAGCUCCAUUCCCGCAAUAGAAUGUGG--UUGAGGCAAAUAUAA ...((((.((((..(((((........)))))..)--))).))))....... ( -13.20, z-score = -2.44, R) >consensus CAAUGUCAUAGCUCCAUUCCCGCAAUAGAAUGUGG__UUGAGGCAAAUAUAA ..........((..((...(((((......)))))...))..))........ (-11.20 = -11.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:02 2011