| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,322,449 – 1,322,568 |
| Length | 119 |
| Max. P | 0.688785 |
| Location | 1,322,449 – 1,322,568 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.92 |
| Shannon entropy | 0.39855 |
| G+C content | 0.44257 |
| Mean single sequence MFE | -28.52 |
| Consensus MFE | -18.52 |
| Energy contribution | -19.68 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1322449 119 + 22422827 -AUCAAAAUCCCGCAGUAUGAGAACUCACAGAUUGCGGCAAUGCUUUCGCCCAAGCAUUAAACAGUGACCUUCUCUACCUUGAAGUUUUUUGUGCUGUGCAGCAACUUGAAAACUUGUUA -.(((.....(((((((.(((....)))...))))))).(((((((......)))))))......)))..............((((((((..((((....))))....)))))))).... ( -27.80, z-score = -0.97, R) >droEre2.scaffold_4644 1308135 104 + 2521924 AUACAAAGUCCCGCGGUCUGGAAACUCACAGAUUGCGGCAAUG-CCUCGCACAAGCAUUGAACUAUGACCUUCU--ACCUUGAAGUUUUCC-UGCUUUGGAGCAACUU------------ .......(((((((((((((........))))))))))(((((-(.........))))))......))).....--......(((((((((-......)))).)))))------------ ( -30.20, z-score = -2.42, R) >droYak2.chrX 1231945 117 + 21770863 -AUGAAAAUCCCGCAGUCUGAGCACUCACAGAUUGCGGCAAUGCUUUCGCACAGGCAUUAAACUAUAACCUUCU--ACCUUGAAGUUUUCCUUGUUUUGCAGCAACUUGCAAACUUGCUG -..(((((..((((((((((........)))))))))).(((((((......)))))))..........((((.--.....))))))))).....(((((((....)))))))....... ( -30.30, z-score = -1.96, R) >droSec1.super_10 1145555 102 + 3036183 ----------------UCUGAGUACUCACAGAUUGCGGCAAUGGUUUCUUCCAAGCAUUAAACUGCGACCUUCU--ACCUUGAAGUUUUCCGUGCUGUGCAGCAACUUGAAAACAUGGUA ----------------((((........)))).(((((.((((.((......)).))))...)))))((((((.--.....)))((((((..((((....))))....))))))..))). ( -21.10, z-score = 0.60, R) >droSim1.chrX 1008147 117 + 17042790 -AUCAAAAUCCCGCAGUCUGAGUACUCACAGAUUGCGGCAAUGGUUUCUUCCAAGCAUUAAACUGCGACCUUCU--ACCUUGAAGUUUUCCGUGCUGUGCAGCAACUUGAAAACAUGGUA -.........((((((((((........))))))))))...(((......))).(((......))).((((((.--.....)))((((((..((((....))))....))))))..))). ( -33.20, z-score = -2.29, R) >consensus _AUCAAAAUCCCGCAGUCUGAGAACUCACAGAUUGCGGCAAUGCUUUCGCCCAAGCAUUAAACUGUGACCUUCU__ACCUUGAAGUUUUCCGUGCUGUGCAGCAACUUGAAAACAUGGUA ..........((((((((((........)))))))))).............((((..............((((........)))).......((((....)))).))))........... (-18.52 = -19.68 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:01 2011